GWAS741547_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS741547_H (esterified cholesterol measurement QTL GWAS741547 (human)) Homo sapiens

Symbol: GWAS741547_H
Name: esterified cholesterol measurement QTL GWAS741547 (human)
RGD ID: 407092571
Trait: esterified cholesterol measurement
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382239,358,362 - 39,358,363RGD_MAPPER_PIPELINEGRCh38
GRCh372239,754,367 - 39,754,368RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS741547_HHumanesterified cholesterol measurement  IAGPrs186680008405850206 GWAS_CATALOGPMID:31551469
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736639SYNGR1synaptogyrin 1223934999139385575Human

Position Markers

Peak: (rs186680008)
Human AssemblyChrPosition (strand)Source
GRCh382239,358,362 - 39,358,363RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407092571GWAS741547_Hesterified cholesterol measurement QTL GWAS741547 (human)3e-08esterified cholesterol measurement223935836239358363Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS741547_H GCST008932 Cholesteryl ester levels 2,045 European ancestry individuals C NR 3E-8 7.523 rs186680008 0.8101 esterified cholesterol measurement (EFO:0008589)
 PMID:31551469
Database Acc Id Source(s)
GWAS Catalog GCST008932 GWAS Catalog

RGD Curation Notes
Note Type Note Reference