GWAS706370_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS706370_H (atopic asthma QTL GWAS706370 (human)) Homo sapiens

Symbol: GWAS706370_H
Name: atopic asthma QTL GWAS706370 (human)
RGD ID: 407057394
Trait: atopic asthma
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38112,069,994 - 12,069,995RGD_MAPPER_PIPELINEGRCh38
GRCh37112,130,051 - 12,130,052RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Asthma  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
737226TNFRSF8TNF receptor superfamily member 811206330312144207Human

Position Markers

Peak: (rs4491070)
Human AssemblyChrPosition (strand)Source
GRCh38112,069,994 - 12,069,995RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407057394GWAS706370_Hatopic asthma QTL GWAS706370 (human)3e-08atopic asthma11206999412069995Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS706370_H GCST009850 Atopic asthma 23,982 European ancestry cases, 393,169 European ancestry controls ? NR 3E-8 7.523 rs4491070 N/A atopic asthma (EFO:0010638)
 PMID:31669095
Database Acc Id Source(s)
GWAS Catalog GCST009850 GWAS Catalog

RGD Curation Notes
Note Type Note Reference