GWAS689788_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS689788_H (chronic obstructive pulmonary disease QTL GWAS689788 (human)) Homo sapiens

Symbol: GWAS689788_H
Name: chronic obstructive pulmonary disease QTL GWAS689788 (human)
RGD ID: 407040812
Trait: chronic obstructive pulmonary disease
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38119,463,064 - 19,463,065RGD_MAPPER_PIPELINEGRCh38
GRCh37119,789,558 - 19,789,559RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1347618CAPZBcapping actin protein of muscle Z-line subunit beta11933877519485539Human

Position Markers

Peak: (rs17395720)
Human AssemblyChrPosition (strand)Source
GRCh38119,463,064 - 19,463,065RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407040812GWAS689788_Hchronic obstructive pulmonary disease QTL GWAS689788 (human)3e-08chronic obstructive pulmonary disease11946306419463065Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS689788_H GCST90244098 Chronic obstructive pulmonary disease liability (machine learning-based score) 325,027 European ancestry individuals T NR 3E-8 7.523 rs17395720 0.0133885 chronic obstructive pulmonary disease (EFO:0000341)
 PMID:37069358
Database Acc Id Source(s)
GWAS Catalog GCST90244098 GWAS Catalog

RGD Curation Notes
Note Type Note Reference