GWAS676252_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS676252_H (sex hormone-binding globulin measurement QTL GWAS676252 (human)) Homo sapiens

Symbol: GWAS676252_H
Name: sex hormone-binding globulin measurement QTL GWAS676252 (human)
RGD ID: 407027276
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,397,690 - 23,397,691RGD_MAPPER_PIPELINEGRCh38
GRCh37123,724,183 - 23,724,184RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS676252_HHumansex hormone-binding globulin measurement  IAGPrs2275355405850206 GWAS_CATALOGPMID:36653534
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1322790TCEA3transcription elongation factor A312338090923424748Human

Position Markers

Peak: (rs2275355)
Human AssemblyChrPosition (strand)Source
GRCh38123,397,690 - 23,397,691RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407027276GWAS676252_Hsex hormone-binding globulin measurement QTL GWAS676252 (human)2e-09sex hormone-binding globulin measurement12339769023397691Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS676252_H GCST90239821 Sex hormone-binding globulin levels 163,363 British ancestry men ? NR 2E-9 8.699 rs2275355 0.0212379 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:36653534
Database Acc Id Source(s)
GWAS Catalog GCST90239821 GWAS Catalog

RGD Curation Notes
Note Type Note Reference