GWAS672031_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS672031_H (serum IgG glycosylation measurement QTL GWAS672031 (human)) Homo sapiens

Symbol: GWAS672031_H
Name: serum IgG glycosylation measurement QTL GWAS672031 (human)
RGD ID: 407023055
Trait: serum IgG glycosylation measurement
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38933,139,455 - 33,139,456RGD_MAPPER_PIPELINEGRCh38
GRCh37933,139,453 - 33,139,454RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS672031_HHumanserum IgG glycosylation measurement  IAGPrs3780486405850206 GWAS_CATALOGPMID:23382691
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1349315B4GALT1beta-1,4-galactosyltransferase 193310407733185089Human

Position Markers

Peak: (rs3780486)
Human AssemblyChrPosition (strand)Source
GRCh38933,139,455 - 33,139,456RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407026515GWAS675491_Hserum IgG glycosylation measurement QTL GWAS675491 (human)5e-11serum IgG glycosylation measurement93313945533139456Human
407023055GWAS672031_Hserum IgG glycosylation measurement QTL GWAS672031 (human)0.000001serum IgG glycosylation measurement93313945533139456Human
407026508GWAS675484_Hserum IgG glycosylation measurement QTL GWAS675484 (human)9e-11serum IgG glycosylation measurement93313945533139456Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS672031_H GCST001848 IgG glycosylation 2,247 European ancestry individuals C 0.737357337934105 0.000001 6 rs3780486 0.1725 serum IgG glycosylation measurement (EFO:0005193)
 PMID:23382691
GWAS675484_H GCST001848 IgG glycosylation 2,247 European ancestry individuals C 0.737437251227131 9E-11 10.046 rs3780486 0.2309 serum IgG glycosylation measurement (EFO:0005193)
 PMID:23382691
GWAS675491_H GCST001848 IgG glycosylation 2,247 European ancestry individuals C 0.737450810521623 5E-11 10.302 rs3780486 0.2341 serum IgG glycosylation measurement (EFO:0005193)
 PMID:23382691
Database Acc Id Source(s)
GWAS Catalog GCST001848 GWAS Catalog

RGD Curation Notes
Note Type Note Reference