GWAS667825_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS667825_H (body height QTL GWAS667825 (human)) Homo sapiens

Symbol: GWAS667825_H
Name: body height QTL GWAS667825 (human)
RGD ID: 407018849
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 4.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38116,954,508 - 16,954,509RGD_MAPPER_PIPELINEGRCh38
GRCh37117,281,003 - 17,281,004RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS667825_HHumanbody height  IAGPrs2076606405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS667825_HHumanbody height  IAGPrs2076606405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS667825_HHumanbody height  IAGPrs2076606405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1313346CROCCciliary rootlet coiled-coil, rootletin11691408516972964Human

Position Markers

Peak: (rs2076606)
Human AssemblyChrPosition (strand)Source
GRCh38116,954,508 - 16,954,509RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407018849GWAS667825_Hbody height QTL GWAS667825 (human)4e-15body height (VT:0001253)body height (CMO:0000106)11695450816954509Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS667825_H GCST90245844 Height 455,180 Hispanic or Latin American individuals T 0.2762 4E-15 14.398 rs2076606 0.0193 body height (EFO:0004339)
 PMID:36224396
Database Acc Id Source(s)
GWAS Catalog GCST90245844 GWAS Catalog

RGD Curation Notes
Note Type Note Reference