GWAS653101_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS653101_H (interferon gamma measurement QTL GWAS653101 (human)) Homo sapiens

Symbol: GWAS653101_H
Name: interferon gamma measurement QTL GWAS653101 (human)
RGD ID: 407004125
Trait: interferon gamma measurement
Measurement Type: mononuclear cell interferon gamma expression   (CMO:0003222)    
LOD Score: Not Available
P Value: 1.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,671,357 - 22,671,358RGD_MAPPER_PIPELINEGRCh38
GRCh37122,997,850 - 22,997,851RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS653101_HHumanmononuclear cell interferon gamma expression  IAGPrs187784918405850206Based on the EFO term IDGWAS_CATALOGPMID:27989323

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS653101_HHumaninterferon gamma measurement  IAGPrs187784918405850206 GWAS_CATALOGPMID:27989323
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs187784918)
Human AssemblyChrPosition (strand)Source
GRCh38122,671,357 - 22,671,358RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406977522GWAS626498_Hmacrophage colony stimulating factor measurement QTL GWAS626498 (human)0.0000003macrophage colony stimulating factor measurement12267135722671358Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407004125GWAS653101_Hinterferon gamma measurement QTL GWAS653101 (human)0.0000001interferon gamma measurementmononuclear cell interferon gamma expression (CMO:0003222)12267135722671358Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS626498_H GCST004436 Macrophage colony stimulating factor levels 840 Finnish ancestry individuals T NR 3E-7 6.523 rs187784918 0.6029 macrophage colony stimulating factor measurement (EFO:0008217)
 PMID:27989323
GWAS653101_H GCST004456 Interferon gamma levels 7,701 Finnish ancestry individuals T NR 1E-7 7 rs187784918 0.3765 interferon gamma measurement (EFO:0008165)
 PMID:27989323
Database Acc Id Source(s)
GWAS Catalog GCST004456 GWAS Catalog

RGD Curation Notes
Note Type Note Reference