GWAS639171_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS639171_H (alcoholic pancreatitis QTL GWAS639171 (human)) Homo sapiens

Symbol: GWAS639171_H
Name: alcoholic pancreatitis QTL GWAS639171 (human)
RGD ID: 406990195
Trait: alcoholic pancreatitis
LOD Score: Not Available
P Value: 6.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38115,522,508 - 15,522,509RGD_MAPPER_PIPELINEGRCh38
GRCh37115,849,003 - 15,849,004RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Pancreatitis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69147CASP9caspase 911549140115524912Human

Position Markers

Peak: (rs4645995)
Human AssemblyChrPosition (strand)Source
GRCh38115,522,508 - 15,522,509RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406990195GWAS639171_Halcoholic pancreatitis QTL GWAS639171 (human)6e-09alcoholic pancreatitis11552250815522509Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS639171_H GCST004860 Alcoholic chronic pancreatitis 1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls ? NR 6E-9 8.222 rs4645995 1.5800284 alcoholic pancreatitis (EFO:1002013)
 PMID:28754779
Database Acc Id Source(s)
GWAS Catalog GCST004860 GWAS Catalog

RGD Curation Notes
Note Type Note Reference