GWAS631711_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS631711_H (testicular carcinoma QTL GWAS631711 (human)) Homo sapiens

Symbol: GWAS631711_H
Name: testicular carcinoma QTL GWAS631711 (human)
RGD ID: 406982735
Trait: testicular carcinoma
LOD Score: Not Available
P Value: 1.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38117,770,950 - 17,770,951RGD_MAPPER_PIPELINEGRCh38
GRCh37118,097,445 - 18,097,446RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602092ACTL8actin like 811775533317827063Human

Position Markers

Peak: (rs111581773)
Human AssemblyChrPosition (strand)Source
GRCh38117,770,950 - 17,770,951RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
406982735GWAS631711_Htesticular carcinoma QTL GWAS631711 (human)0.0000001testicular carcinoma11777095017770951Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS631711_H GCST90011805 Testicular cancer 713 European ancestry cases, 359,825 European ancestry controls C 0.030098 1E-7 7 rs111581773 1.8748993 testicular carcinoma (EFO:0005088)
 PMID:32887889
Database Acc Id Source(s)
GWAS Catalog GCST90011805 GWAS Catalog

RGD Curation Notes
Note Type Note Reference