GWAS606859_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS606859_H (high density lipoprotein cholesterol measurement QTL GWAS606859 (human)) Homo sapiens

Symbol: GWAS606859_H
Name: high density lipoprotein cholesterol measurement QTL GWAS606859 (human)
RGD ID: 406957883
Trait: high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 2.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381656,956,804 - 56,956,805RGD_MAPPER_PIPELINEGRCh38
GRCh371656,990,716 - 56,990,717RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS606859_HHumanblood high density lipoprotein cholesterol level  IAGPrs247617405850206Based on the EFO term IDGWAS_CATALOGPMID:34610981

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS606859_HHumanesterified cholesterol measurement  IAGPrs247617405850206 GWAS_CATALOGPMID:34610981
GWAS606859_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs247617405850206 GWAS_CATALOGPMID:34610981
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs247617)
Human AssemblyChrPosition (strand)Source
GRCh381656,956,804 - 56,956,805RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407142594GWAS791570_Htriglyceride measurement QTL GWAS791570 (human)2e-20triglyceride measurementblood triglyceride level (CMO:0000118)165695680456956805Human
407204163GWAS853139_Hhigh density lipoprotein cholesterol measurement QTL GWAS853139 (human)3e-175high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
406952006GWAS600982_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS600982 (human)8e-12lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
406958278GWAS607254_Hhigh density lipoprotein cholesterol measurement QTL GWAS607254 (human)1e-12phosphatidylcholine measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407190093GWAS839069_Hlysophosphatidylethanolamine measurement QTL GWAS839069 (human)3e-11lysophosphatidylethanolamine measurement165695680456956805Human
406953161GWAS602137_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS602137 (human)1e-10phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
406953160GWAS602136_Hhigh density lipoprotein cholesterol measurement QTL GWAS602136 (human)1e-11high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407177550GWAS826526_Hhigh density lipoprotein cholesterol measurement QTL GWAS826526 (human)1e-08triglyceride measurementblood triglyceride level (CMO:0000118)165695680456956805Human
407246797GWAS895773_Hlow density lipoprotein cholesterol measurement QTL GWAS895773 (human)2e-101low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)165695680456956805Human
407168072GWAS817048_Htotal cholesterol measurement, diastolic blood pressure, triglyceride measurement, systolic blood pressure, hematocrit, ventricular rate measurement, glucose measurement, body mass index, high density lipoprotein cholesterol measurement QTL GWAS817048 (human)4e-165total cholesterol measurement, diastolic blood pressure, triglyceride measurement, systolic blood pressure, hematocrit, ventricular rate measurement, glucose measurement, body mass index, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407123656GWAS772632_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS772632 (human)4e-14phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407123658GWAS772634_Hhigh density lipoprotein cholesterol measurement QTL GWAS772634 (human)4e-18high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407016147GWAS665123_Hmetabolic syndrome QTL GWAS665123 (human)9e-60metabolic syndrome165695680456956805Human
407123671GWAS772647_Hhigh density lipoprotein cholesterol measurement QTL GWAS772647 (human)2e-14high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
406954197GWAS603173_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS603173 (human)9e-09triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407123665GWAS772641_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS772641 (human)7e-19free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
406928599GWAS577575_H1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) measurement QTL GWAS577575 (human)2e-13phosphatidylcholine measurement165695680456956805Human
407104347GWAS753323_Hhigh density lipoprotein cholesterol measurement QTL GWAS753323 (human)1e-300high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
406959065GWAS608041_Hhigh density lipoprotein particle size measurement QTL GWAS608041 (human)1e-17high density lipoprotein particle size measurementblood high density lipoprotein particle diameter (CMO:0002692)165695680456956805Human
407220319GWAS869295_Hblood protein measurement QTL GWAS869295 (human)2e-54blood protein measurementblood protein measurement (CMO:0000028)165695680456956805Human
407104350GWAS753326_Hhigh density lipoprotein cholesterol measurement QTL GWAS753326 (human)8e-20high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407092701GWAS741677_Hlactosyl-N-nervonoyl-sphingosine (d18:1/24:1) measurement QTL GWAS741677 (human)6e-10lactosyl-N-nervonoyl-sphingosine (d18:1/24:1) measurement165695680456956805Human
407104349GWAS753325_Hhigh density lipoprotein cholesterol measurement QTL GWAS753325 (human)4e-48high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407104348GWAS753324_Hhigh density lipoprotein cholesterol measurement QTL GWAS753324 (human)3e-68high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407124196GWAS773172_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS773172 (human)1e-14esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407016419GWAS665395_Hhigh density lipoprotein cholesterol measurement QTL GWAS665395 (human)3e-16total cholesterol measurement, high density lipoprotein cholesterol measurementblood total cholesterol level (CMO:0000051)165695680456956805Human
406903394GWAS552370_H1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) measurement QTL GWAS552370 (human)1e-191-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) measurement165695680456956805Human
406939362GWAS588338_Hapolipoprotein A 1 measurement QTL GWAS588338 (human)1e-16lipid measurement, high density lipoprotein cholesterol measurementblood lipid measurement (CMO:0000050)165695680456956805Human
407124193GWAS773169_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS773169 (human)8e-16total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407016420GWAS665396_Hhigh density lipoprotein cholesterol measurement QTL GWAS665396 (human)1e-44high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407190115GWAS839091_Hphosphatidylcholine measurement QTL GWAS839091 (human)8e-13phosphatidylcholine measurement165695680456956805Human
407099109GWAS748085_Hlow density lipoprotein cholesterol measurement QTL GWAS748085 (human)2e-24low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)165695680456956805Human
407124195GWAS773171_Hhigh density lipoprotein particle size measurement QTL GWAS773171 (human)5e-20high density lipoprotein particle size measurementblood high density lipoprotein particle diameter (CMO:0002692)165695680456956805Human
407123949GWAS772925_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS772925 (human)7e-14free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407178225GWAS827201_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS827201 (human)6e-97total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407123964GWAS772940_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS772940 (human)1e-09low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)165695680456956805Human
407179897GWAS828873_Hlinoleic acid measurement QTL GWAS828873 (human)1e-31linoleic acid measurementblood free fatty acids level (CMO:0000117)165695680456956805Human
406928384GWAS577360_H1-palmityl-2-oleoyl-GPC (O-16:0/18:1) measurement QTL GWAS577360 (human)4e-171-palmityl-2-oleoyl-GPC (O-16:0/18:1) measurement165695680456956805Human
407176589GWAS825565_Htotal cholesterol measurement QTL GWAS825565 (human)5e-11total cholesterol measurementblood total cholesterol level (CMO:0000051)165695680456956805Human
407124493GWAS773469_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS773469 (human)6e-09triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407123982GWAS772958_Hvery low density lipoprotein cholesterol measurement QTL GWAS772958 (human)5e-08very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)165695680456956805Human
407123983GWAS772959_Hvery low density lipoprotein cholesterol measurement, esterified cholesterol measurement QTL GWAS772959 (human)2e-09high density lipoprotein cholesterol measurement, response to fenofibrateblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
406959242GWAS608218_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS608218 (human)2e-10low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)165695680456956805Human
407183765GWAS832741_Hphosphatidylcholine measurement QTL GWAS832741 (human)6e-12phosphatidylcholine measurement165695680456956805Human
406941719GWAS590695_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS590695 (human)8e-14total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
406957207GWAS606183_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS606183 (human)8e-17esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407252764GWAS901740_Hlow density lipoprotein cholesterol measurement QTL GWAS901740 (human)4e-137low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)165695680456956805Human
407094552GWAS743528_Hblood protein measurement QTL GWAS743528 (human)4e-19blood protein measurementblood protein measurement (CMO:0000028)165695680456956805Human
407185816GWAS834792_Hlysophosphatidylcholine measurement QTL GWAS834792 (human)9e-11phosphatidylcholine measurementblood phospholipid level (CMO:0001169)165695680456956805Human
407236507GWAS885483_Hblood protein measurement QTL GWAS885483 (human)1e-39blood protein measurementblood protein measurement (CMO:0000028)165695680456956805Human
407261464GWAS910440_HAbdominal Aortic Aneurysm QTL GWAS910440 (human)5e-17Abdominal Aortic Aneurysm165695680456956805Human
407221274GWAS870250_Hblood protein measurement QTL GWAS870250 (human)8e-60blood protein measurementblood protein measurement (CMO:0000028)165695680456956805Human
407183777GWAS832753_Hphosphatidylcholine measurement QTL GWAS832753 (human)9e-13phosphatidylcholine measurement165695680456956805Human
407182624GWAS831600_Hphosphatidylcholine measurement QTL GWAS831600 (human)3e-12phosphatidylcholine measurement165695680456956805Human
407087140GWAS736116_Hphospholipids:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS736116 (human)1e-134phospholipids:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407189805GWAS838781_Hlysophosphatidylethanolamine measurement QTL GWAS838781 (human)2e-11lysophosphatidylethanolamine measurement165695680456956805Human
407178542GWAS827518_Hlevel of phosphatidylcholine QTL GWAS827518 (human)3e-10level of phosphatidylcholine165695680456956805Human
407143855GWAS792831_Htotal cholesterol measurement QTL GWAS792831 (human)2e-21total cholesterol measurementblood total cholesterol level (CMO:0000051)165695680456956805Human
407218601GWAS867577_Hhigh density lipoprotein cholesterol measurement QTL GWAS867577 (human)5e-09high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407203497GWAS852473_Hblood protein measurement QTL GWAS852473 (human)3e-27blood protein measurementblood protein measurement (CMO:0000028)165695680456956805Human
407174825GWAS823801_Htriglyceride measurement QTL GWAS823801 (human)0.000002triglyceride measurementblood triglyceride level (CMO:0000118)165695680456956805Human
407123380GWAS772356_Hapolipoprotein A 1 measurement QTL GWAS772356 (human)6e-15apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)165695680456956805Human
407143860GWAS792836_Htotal cholesterol measurement QTL GWAS792836 (human)5e-30total cholesterol measurementblood total cholesterol level (CMO:0000051)165695680456956805Human
406957488GWAS606464_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS606464 (human)5e-18free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
406888242GWAS537218_Hmetabolic syndrome QTL GWAS537218 (human)2e-166metabolic syndrome165695680456956805Human
407252276GWAS901252_Htriglyceride measurement QTL GWAS901252 (human)6e-118triglyceride measurementblood triglyceride level (CMO:0000118)165695680456956805Human
406957493GWAS606469_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS606469 (human)1e-15high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407143857GWAS792833_Htotal cholesterol measurement QTL GWAS792833 (human)0.0000003total cholesterol measurementblood total cholesterol level (CMO:0000051)165695680456956805Human
407214640GWAS863616_Hserum metabolite measurement QTL GWAS863616 (human)4e-11serum metabolite measurement165695680456956805Human
407250227GWAS899203_Hlow density lipoprotein cholesterol measurement QTL GWAS899203 (human)2e-41low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)165695680456956805Human
406957880GWAS606856_Hhigh density lipoprotein cholesterol measurement QTL GWAS606856 (human)3e-15high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407123390GWAS772366_Hhigh density lipoprotein cholesterol measurement QTL GWAS772366 (human)2e-16high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407142590GWAS791566_Htriglyceride measurement QTL GWAS791566 (human)8e-19triglyceride measurementblood triglyceride level (CMO:0000118)165695680456956805Human
406957883GWAS606859_Hhigh density lipoprotein cholesterol measurement QTL GWAS606859 (human)2e-17esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
406951997GWAS600973_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS600973 (human)7e-12free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human
407167545GWAS816521_Htotal cholesterol measurement, hematocrit, stroke, ventricular rate measurement, body mass index, atrial fibrillation, high density lipoprotein cholesterol measurement, coronary artery disease, diastolic blood pressure, triglyceride measurement, systolic blood pressure, heart failure, diabetes mellitus, glucose measurement, mortality, cancer QTL GWAS816521 (human)1e-149total cholesterol measurement, hematocrit, stroke, ventricular rate measurement, body mass index, atrial fibrillation, high density lipoprotein cholesterol measurement, coronary artery disease, diastolic blood pressure, triglyceride measurement, systolic blood pressure, heart failure, diabetes mellitus, glucose measurement, mortality, cancerratio of deaths to total study population during a period of time (CMO:0001023)165695680456956805Human
406951996GWAS600972_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS600972 (human)5e-13esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)165695680456956805Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS537218_H GCST009602 Metabolic syndrome 291,107 European ancestry individuals A 0.324218 2E-166 165.699 rs247617 0.196432 metabolic syndrome (EFO:0000195)
 PMID:31589552
GWAS552370_H GCST90102639 1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) levels 8,809 European ancestry individuals A NR 1E-19 19 rs247617 0.137 1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) measurement (EFO:0800464)
 PMID:35050183
GWAS577360_H GCST90102734 1-palmityl-2-oleoyl-GPC (o-16:0/18:1) levels 8,809 European ancestry individuals A NR 4E-17 16.398 rs247617 0.131 1-palmityl-2-oleoyl-GPC (O-16:0/18:1) measurement (EFO:0800425)
 PMID:35050183
GWAS577575_H GCST90102721 1-palmitoyl-2-linoleoyl-gpc (16:0/18:2) levels 8,809 European ancestry individuals A NR 2E-13 12.699 rs247617 0.116 1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) measurement (EFO:0800610)
 PMID:35050183
GWAS665123_H GCST001436 Metabolic syndrome 2,637 European ancestry cases, 7,927 European ancestry controls C 0.72 9E-60 59.046 rs247617 0.25 metabolic syndrome (EFO:0000195)
 PMID:22399527
GWAS665395_H GCST002043 HDL cholesterol 7,917 African American individuals, 3,506 Hispanic individuals C 0.298 3E-16 15.523 rs247617 0.0509 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:23726366
GWAS665396_H GCST002043 HDL cholesterol 7,917 African American individuals, 3,506 Hispanic individuals A 0.262 1E-44 44 rs247617 0.0619 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:23726366
GWAS736116_H GCST90302040 Phospholipids to total lipids ratio in medium HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.3147 1E-134 134 rs247617 0.1061 phospholipids:total lipids ratio (EFO:0020946)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:38448586
GWAS741677_H GCST90200098 Lactosyl-N-nervonoyl-sphingosine (d18:1/24:1) levels 8,265 European ancestry individuals A 0.326169 6E-10 9.222 rs247617 0.0993477 lactosyl-N-nervonoyl-sphingosine (d18:1/24:1) measurement (EFO:0800517)
 PMID:36635386
GWAS743528_H GCST90314828 FIS1/MPIG6B protein level ratio 43,509 European ancestry individuals ? NR 4E-19 18.398 rs247617 0.0657896 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS748085_H GCST002898 LDL cholesterol up 62,166 European ancestry individuals C 0.69 2E-24 23.699 rs247617 0.069 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:25961943
GWAS753323_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.683 1E-300 300 rs247617 0.215 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS753324_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.701 3E-68 67.523 rs247617 0.235 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS753325_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.828 4E-48 47.398 rs247617 0.256 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS753326_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.741 8E-20 19.097 rs247617 0.225 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
None Available GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 1E-300 300 rs247617 0.218 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS791566_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.683 8E-19 18.097 rs247617 0.04 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS791570_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 2E-20 19.699 rs247617 0.038 triglyceride measurement (EFO:0004530)
 PMID:29507422
None Available GCST007141 Low density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.683 2E-10 9.699 rs247617 0.033 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:29507422
None Available GCST007141 Low density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 1E-9 9 rs247617 0.029 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:29507422
GWAS792831_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.683 2E-21 20.699 rs247617 0.048 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS792833_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.701 3E-7 6.523 rs247617 0.083 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS792836_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 5E-30 29.302 rs247617 0.052 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS816521_H GCST004045 Age-related diseases, mortality and associated endophenotypes 9,618 European ancestry individuals ? NR 1E-149 149 rs247617 N/A total cholesterol measurement (EFO:0004574)
hematocrit (EFO:0004348)
stroke (EFO:0000712)
ventricular rate measurement (EFO:0007928)
More... 		PMID:27790247
GWAS817048_H GCST004046 Age-related disease endophenotypes 9,618 European ancestry individuals ? NR 4E-165 164.398 rs247617 N/A total cholesterol measurement (EFO:0004574)
diastolic blood pressure (EFO:0006336)
triglyceride measurement (EFO:0004530)
systolic blood pressure (EFO:0006335)
More... 		PMID:27790247
GWAS823801_H GCST008046 Triglyceride levels 9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals ? NR 0.000002 5.699 rs247617 0.02120415 triglyceride measurement (EFO:0004530)
 PMID:31217584
GWAS825565_H GCST008045 Total cholesterol levels 10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals ? NR 5E-11 10.302 rs247617 2.534521 total cholesterol measurement (EFO:0004574)
 PMID:31217584
GWAS826526_H GCST007301 High density lipoprotein cholesterol levels 817 individuals ? NR 1E-8 8 rs247617 0.315 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30263045
None Available GCST007300 Response to fenofibrate (HDL cholesterol levels) 817 individuals ? NR 2E-9 8.699 rs247617 0.332 high density lipoprotein cholesterol measurement (EFO:0004612)
response to fenofibrate (GO:1901557)
 PMID:30263045
GWAS827201_H GCST90132681 Total cholesterol levels in HDL 21,555 European ancestry individuals A 0.3 6E-97 96.222 rs247617 0.23 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:27005778
GWAS827518_H GCST90277333 Phosphatidylcholine (O-17:0_17:1) levels 6,880 Finnish ancestry individuals A 0.278171 3E-10 9.523 rs247617 0.119812 PMID:37907536
GWAS828873_H GCST90092880 Linoleic acid levels 115,006 European ancestry individuals C 0.676382 1E-31 31 rs247617 0.0507509 linoleic acid measurement (EFO:0006807)
 PMID:35213538
GWAS831600_H GCST90060163 Phosphatidylcholine-O_18:0_[M+H]1+/Lysophosphatidylethanolamine_21:0_[M+H]1+ levels 13,814 British ancestry individuals A NR 3E-12 11.523 rs247617 0.0797258 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS832741_H GCST90060284 Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels 13,814 British ancestry individuals A NR 6E-12 11.222 rs247617 0.0835296 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060277 Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels 13,814 British ancestry individuals A NR 1E-12 12 rs247617 0.0912931 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS832753_H GCST90060254 Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels 13,814 British ancestry individuals A NR 9E-13 12.046 rs247617 0.090454 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS834792_H GCST90060150 Lysophosphatidylcholine_16:0_[M+H]1+/Lysophosphatidylethanolamine_19:0_[M+H]1+ levels 13,814 British ancestry individuals A NR 9E-11 10.046 rs247617 0.0664505 lysophosphatidylcholine measurement (EFO:0010224)
 PMID:34503513
None Available GCST90060311 Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels 13,814 British ancestry individuals A NR 2E-13 12.699 rs247617 0.091978 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060298 Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels 13,814 British ancestry individuals A NR 9E-11 10.046 rs247617 0.080185 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS838781_H GCST90060143 Lysophosphatidylethanolamine_18:0_[M-H]1- levels 13,814 British ancestry individuals A NR 2E-11 10.699 rs247617 0.0559305 lysophosphatidylethanolamine measurement (EFO:0010225)
 PMID:34503513
GWAS839069_H GCST90060156 Lysophosphatidylethanolamine_20:0_[M-H]1- levels 13,814 British ancestry individuals A NR 3E-11 10.523 rs247617 0.0592773 lysophosphatidylethanolamine measurement (EFO:0010225)
 PMID:34503513
GWAS839091_H GCST90060303 Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels 13,814 British ancestry individuals A NR 8E-13 12.097 rs247617 0.0859655 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060307 Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels 13,814 British ancestry individuals A NR 2E-11 10.699 rs247617 0.0837227 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS852473_H GCST90314826 FIS1/HTRA2 protein level ratio 43,509 European ancestry individuals ? NR 3E-27 26.523 rs247617 0.0798635 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS853139_H GCST008035 High density lipoprotein cholesterol levels 10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals ? NR 3E-175 174.523 rs247617 3.496861 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:31217584
GWAS863616_H GCST012021 Serum metabolite levels 3,926 Hispanic/Latino individuals C 0.704152 4E-11 10.398 rs247617 0.16 serum metabolite measurement (EFO:0005653)
 PMID:33031748
None Available GCST012020 Serum metabolite levels 3,926 Hispanic/Latino individuals C 0.704152 4E-11 10.398 rs247617 0.16 serum metabolite measurement (EFO:0005653)
 PMID:33031748
None Available GCST90133363 Linoleic acid levels 114,999 European ancestry individuals C 0.68 1E-31 31 rs247617 0.051 linoleic acid measurement (EFO:0006807)
 PMID:35692035
GWAS867577_H GCST90044894 HDL cholesterol levels in type 2 diabetes 1,037 youth cases ? NR 5E-9 8.302 rs247617 N/A high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34568709
None Available GCST90239611 High density lipoprotein cholesterol levels 76,531 Taiwanese ancestry individuals ? NR 1E-300 300 rs247617 3.32961 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36329257
GWAS869295_H GCST90315310 LDLR/MEGF9 protein level ratio 43,509 European ancestry individuals ? NR 2E-54 53.699 rs247617 0.112943 blood protein measurement (EFO:0007937)
 PMID:38412862
None Available GCST90086174 High density lipoprotein cholesterol levels 2,199 Taiwanese ancestry individuals ? NR 1E-15 15 rs247617 N/A high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34680977
None Available GCST90179134 HDL cholesterol levels adjusted for adiponectin levels 2,199 Taiwanese ancestry individuals ? NR 1E-15 15 rs247617 N/A high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34680977
GWAS870250_H GCST90315311 LDLR/PCSK9 protein level ratio 43,509 European ancestry individuals ? NR 8E-60 59.097 rs247617 0.119364 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS885483_H GCST90314501 DNAJA2/FIS1 protein level ratio 43,509 European ancestry individuals ? NR 1E-39 39 rs247617 0.097035 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS895773_H GCST90239658 Low density lipoprotein cholesterol levels 1,320,016 European ancestry individuals A 0.320829 2E-101 100.699 rs247617 0.0366691 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
None Available GCST90239662 Triglyceride levels 99,432 Admixed African or African ancestry individuals A 0.259122 1E-8 8 rs247617 0.0306595 triglyceride measurement (EFO:0004530)
 PMID:34887591
GWAS899203_H GCST90018961 LDL cholesterol 343,621 European ancestry individuals, 72,866 East Asian ancestry individuals A NR 2E-41 40.699 rs247617 0.0312 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34594039
GWAS901252_H GCST90239661 Triglyceride levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 6E-118 117.222 rs247617 N/A triglyceride measurement (EFO:0004530)
 PMID:34887591
GWAS901740_H GCST90239655 Low density lipoprotein cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 4E-137 136.398 rs247617 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
GWAS910440_H GCST90432152 Abdominal aortic aneurysm 37,214 European ancestry cases, 997,776 European ancestry controls, 2,007 African ancestry cases, 88,331 African ancestry controls ? NR 5E-17 16.302 rs247617 0.0718 Abdominal Aortic Aneurysm (EFO:0004214)
 PMID:37845353
None Available GCST90091681 Postprandial cholesterol esters in large HDL null A 0.334911714 5E-13 12.302 rs247617 0.170493 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091707 Postprandial triglycerides levels in medium HDL null A 0.330243156 2E-10 9.699 rs247617 0.146173 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091621 Fasting total cholesterol in very large HDL null A 0.335678977 2E-17 16.699 rs247617 0.188105 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091682 Postprandial free cholesterol in large HDL null A 0.334911714 7E-12 11.155 rs247617 0.162226 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091683 Postprandial total lipids in large HDL null A 0.334911714 8E-12 11.097 rs247617 0.16172 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091684 Postprandial large HDL particle concentration null A 0.334911714 1E-11 11 rs247617 0.161029 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091622 Fasting cholesterol esters in very large HDL null A 0.335678977 8E-17 16.097 rs247617 0.184799 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091685 Postprandial phospholipid levels in large HDL null A 0.334911714 1E-10 10 rs247617 0.151556 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091686 Postprandial triglycerides levels in large HDL null A 0.334911714 9E-9 8.046 rs247617 0.136007 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091507 Fasting apolipoprotein A-I null A 0.332185678 6E-15 14.222 rs247617 0.171197 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:34610981
None Available GCST90091623 Fasting free cholesterol in very large HDL null A 0.335678977 5E-18 17.302 rs247617 0.191747 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091624 Fasting total lipids in very large HDL null A 0.335678977 1E-15 15 rs247617 0.177127 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091761 Postprandial total cholesterol in very large HDL null A 0.332545696 4E-18 17.398 rs247617 0.203006 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091762 Postprandial cholesterol esters in very large HDL null A 0.332545696 2E-17 16.699 rs247617 0.199062 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091605 Fasting total cholesterol in small VLDL null A 0.331937169 5E-8 7.302 rs247617 0.120039 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:34610981
None Available GCST90091625 Fasting very large HDL particle concentration null A 0.335678977 3E-15 14.523 rs247617 0.175458 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091606 Fasting cholesterol esters in small VLDL null A 0.331937169 2E-9 8.699 rs247617 0.132608 very low density lipoprotein cholesterol measurement (EFO:0008317)
esterified cholesterol measurement (EFO:0008589)
 PMID:34610981
None Available GCST90091540 Fasting total cholesterol in large HDL null A 0.336183606 2E-14 13.699 rs247617 0.170849 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091520 Fasting total cholesterol in HDL2 null A 0.332287985 3E-16 15.523 rs247617 0.179679 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091649 Postprandial apolipoprotein A-I null A 0.330282199 1E-16 16 rs247617 0.18984 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:34610981
None Available GCST90091522 Fasting total cholesterol in HDL null A 0.332185678 8E-16 15.097 rs247617 0.176436 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091523 Fasting mean diameter of HDL particles null A 0.332185678 5E-20 19.302 rs247617 0.200706 high density lipoprotein particle size measurement (EFO:0008592)
 PMID:34610981
None Available GCST90091763 Postprandial free cholesterol in very large HDL null A 0.332545696 7E-19 18.155 rs247617 0.207757 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091764 Postprandial total lipids in very large HDL null A 0.332545696 1E-16 16 rs247617 0.193986 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091765 Postprandial very large HDL particle concentration null A 0.332545696 2E-16 15.699 rs247617 0.192403 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091596 Fasting triglycerides levels in small HDL null A 0.332324158 6E-9 8.222 rs247617 0.127651 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091665 Postprandial mean diameter of HDL particles null A 0.330282199 1E-17 17 rs247617 0.195739 high density lipoprotein particle size measurement (EFO:0008592)
 PMID:34610981
None Available GCST90091766 Postprandial phospholipid levels in very large HDL null A 0.332545696 4E-14 13.398 rs247617 0.176827 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091662 Postprandial total cholesterol in HDL2 null A 0.330424151 1E-16 16 rs247617 0.189568 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091663 Postprandial total cholesterol in HDL3 null A 0.330282199 8E-14 13.097 rs247617 0.171255 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091664 Postprandial total cholesterol in HDL null A 0.330282199 1E-16 16 rs247617 0.189563 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091567 Fasting triglycerides levels in medium HDL null A 0.332570369 1E-9 9 rs247617 0.134196 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091541 Fasting cholesterol esters in large HDL null A 0.336183606 1E-14 14 rs247617 0.172038 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091542 Fasting free cholesterol in large HDL null A 0.336183606 7E-14 13.155 rs247617 0.167423 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091680 Postprandial total cholesterol in large HDL null A 0.334911714 1E-12 12 rs247617 0.168396 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90454454 Metabolic syndrome 24,171 Taiwanese ancestry cases, 83,059 Taiwanese ancestry controls C 0.1473 1E-22 22 rs247617 0.14318 metabolic syndrome (EFO:0000195)
 PMID:38201907
Database Acc Id Source(s)
GWAS Catalog GCST90091621 GWAS Catalog
  GCST90091762 GWAS Catalog

RGD Curation Notes
Note Type Note Reference