GWAS580375_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS580375_H (tuberculosis QTL GWAS580375 (human)) Homo sapiens

Symbol: GWAS580375_H
Name: tuberculosis QTL GWAS580375 (human)
RGD ID: 406931399
Trait: tuberculosis
LOD Score: Not Available
P Value: 1.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381424,214,098 - 24,214,099RGD_MAPPER_PIPELINEGRCh38
GRCh371424,683,304 - 24,683,305RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS580375_HHumantuberculosis  IAGPrs145254894405850206 GWAS_CATALOGPMID:37108169
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1601722MDP1magnesium dependent phosphatase 1142421394324216066Human
5013872NEDD8-MDP1NEDD8-MDP1 readthrough142421394324232367Human

Position Markers

Peak: (rs145254894)
Human AssemblyChrPosition (strand)Source
GRCh381424,214,098 - 24,214,099RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406931399GWAS580375_Htuberculosis QTL GWAS580375 (human)1e-10tuberculosis142421409824214099Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS580375_H GCST90276153 Tuberculosis 12 Vis (founder/genetic isolate) cases, 16 Korculan (founder/genetic isolate) cases, 6 Split cases, 948 Vis (founder/genetic isolate) controls, 2,682 Korculan (founder/genetic isolate) controls, 960 Split controls A 0.011 1E-10 10 rs145254894 1.07 PMID:37108169
Database Acc Id Source(s)
GWAS Catalog GCST90276153 GWAS Catalog

RGD Curation Notes
Note Type Note Reference