GWAS577801_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS577801_H (neuroimaging measurement QTL GWAS577801 (human)) Homo sapiens

Symbol: GWAS577801_H
Name: neuroimaging measurement QTL GWAS577801 (human)
RGD ID: 406928825
Trait: neuroimaging measurement
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3818,678,878 - 8,678,879RGD_MAPPER_PIPELINEGRCh38
GRCh3718,738,937 - 8,738,938RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS577801_HHumanneuroimaging measurement  IAGPrs4908507405850206 GWAS_CATALOGPMID:35164939
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344336REREarginine-glutamic acid dipeptide repeats183524048817640Human

Position Markers

Peak: (rs4908507)
Human AssemblyChrPosition (strand)Source
GRCh3818,678,878 - 8,678,879RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406928825GWAS577801_Hneuroimaging measurement QTL GWAS577801 (human)3e-08neuroimaging measurement186788788678879Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS577801_H GCST90239729 Brain morphology (MOSTest) 33,735 white British ancestry individuals ? NR 3E-8 7.523 rs4908507 N/A neuroimaging measurement (EFO:0004346)
 PMID:35164939
Database Acc Id Source(s)
GWAS Catalog GCST90239729 GWAS Catalog

RGD Curation Notes
Note Type Note Reference