GWAS576179_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS576179_H (body height QTL GWAS576179 (human)) Homo sapiens

Symbol: GWAS576179_H
Name: body height QTL GWAS576179 (human)
RGD ID: 406927203
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382230,116,489 - 30,116,490RGD_MAPPER_PIPELINEGRCh38
GRCh372230,512,478 - 30,512,479RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS576179_HHumanbody height  IAGPrs4823074405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS576179_HHumanbody height  IAGPrs4823074405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS576179_HHumanbody height  IAGPrs4823074405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348799HORMAD2HORMA domain containing 2223007773230207456Human

Position Markers

Peak: (rs4823074)
Human AssemblyChrPosition (strand)Source
GRCh382230,116,489 - 30,116,490RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581529BP71_HBlood pressure QTL 71 (human)20.001Blood pressurepulse pressure221109496637094966Human
406927203GWAS576179_Hbody height QTL GWAS576179 (human)3e-08body height (VT:0001253)body height (CMO:0000106)223011648930116490Human
2289428BW313_HBody weight QTL 313 (human)2.090.0015Body weightBMI221134428437344284Human
407345137GWAS994113_Halcohol consumption measurement QTL GWAS994113 (human)1e-14alcohol consumption measurementethanol drink intake rate (CMO:0001407)223011648930116490Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS576179_H GCST90245844 Height 455,180 Hispanic or Latin American individuals G 0.4527 3E-8 7.523 rs4823074 0.0119 body height (EFO:0004339)
 PMID:36224396
GWAS994113_H GCST90243984 Drinks per week 2,428,851 European ancestry individuals A 0.462 1E-14 14 rs4823074 0.00704 alcohol consumption measurement (EFO:0007878)
 PMID:36477530
Database Acc Id Source(s)
GWAS Catalog GCST90245844 GWAS Catalog

RGD Curation Notes
Note Type Note Reference