GWAS572941_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS572941_H (body fat distribution QTL GWAS572941 (human)) Homo sapiens

Symbol: GWAS572941_H
Name: body fat distribution QTL GWAS572941 (human)
RGD ID: 406923965
Trait: body fat distribution
Measurement Type: body fat morphological measurement   (CMO:0000089)    
LOD Score: Not Available
P Value: 3.0E-26
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381573,940,096 - 73,940,097RGD_MAPPER_PIPELINEGRCh38
GRCh371574,232,437 - 74,232,438RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS572941_HHumanbody fat morphological measurement  IAGPrs12905253405850206Based on the EFO term IDGWAS_CATALOGPMID:30664634

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS572941_HHumanbody fat distribution  IAGPrs12905253405850206 GWAS_CATALOGPMID:30664634
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1318705LOXL1lysyl oxidase like 1157392646273952136Human

Position Markers

Peak: (rs12905253)
Human AssemblyChrPosition (strand)Source
GRCh381573,940,096 - 73,940,097RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406927635GWAS576611_Hbody fat distribution QTL GWAS576611 (human)1e-14body fat distributionbody fat morphological measurement (CMO:0000089)157394009673940097Human
406926692GWAS575668_Hbody fat distribution QTL GWAS575668 (human)1e-18body fat distributionbody fat morphological measurement (CMO:0000089)157394009673940097Human
407060534GWAS709510_Hbody fat distribution QTL GWAS709510 (human)0.000001body fat distributionbody fat morphological measurement (CMO:0000089)157394009673940097Human
406931590GWAS580566_Hbody fat distribution QTL GWAS580566 (human)5e-08body fat distributionbody fat morphological measurement (CMO:0000089)157394009673940097Human
406924057GWAS573033_Hbody fat distribution QTL GWAS573033 (human)2e-21body fat distributionbody fat morphological measurement (CMO:0000089)157394009673940097Human
406923965GWAS572941_Hbody fat distribution QTL GWAS572941 (human)3e-26body fat distributionbody fat morphological measurement (CMO:0000089)157394009673940097Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS572941_H GCST007294 Body fat distribution (trunk fat ratio) 55,006 British ancestry males, 61,132 British ancestry females A 0.459048 3E-26 25.523 rs12905253 0.03214 body fat distribution (EFO:0004341)
 PMID:30664634
GWAS573033_H GCST007294 Body fat distribution (trunk fat ratio) 55,006 British ancestry males, 61,132 British ancestry females A 0.459048 2E-21 20.699 rs12905253 0.0224 body fat distribution (EFO:0004341)
 PMID:30664634
GWAS575668_H GCST007295 Body fat distribution (leg fat ratio) 55,006 British ancestry males, 61,132 British ancestry females A 0.459048 1E-18 18 rs12905253 0.02739 body fat distribution (EFO:0004341)
 PMID:30664634
GWAS576611_H GCST007295 Body fat distribution (leg fat ratio) 55,006 British ancestry males, 61,132 British ancestry females A 0.459048 1E-14 14 rs12905253 0.01841 body fat distribution (EFO:0004341)
 PMID:30664634
GWAS580566_H GCST007293 Body fat distribution (arm fat ratio) 55,006 British ancestry males, 61,132 British ancestry females A 0.459048 5E-8 7.302 rs12905253 0.01165 body fat distribution (EFO:0004341)
 PMID:30664634
GWAS709510_H GCST007293 Body fat distribution (arm fat ratio) 55,006 British ancestry males, 61,132 British ancestry females A 0.459048 0.000001 6 rs12905253 0.0117 body fat distribution (EFO:0004341)
 PMID:30664634
Database Acc Id Source(s)
GWAS Catalog GCST007294 GWAS Catalog

RGD Curation Notes
Note Type Note Reference