GWAS566112_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS566112_H (alcohol consumption measurement QTL GWAS566112 (human)) Homo sapiens

Symbol: GWAS566112_H
Name: alcohol consumption measurement QTL GWAS566112 (human)
RGD ID: 406917136
Trait: alcohol consumption measurement
Measurement Type: ethanol drink intake rate   (CMO:0001407)    
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3821,341,624 - 1,341,625RGD_MAPPER_PIPELINEGRCh38
GRCh3721,345,396 - 1,345,397RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS566112_HHumanethanol drink intake rate  IAGPrs62105575405850206Based on the EFO term IDGWAS_CATALOGPMID:32193382

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS566112_HHumanalcohol consumption measurement  IAGPrs62105575405850206 GWAS_CATALOGPMID:32193382
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1350202SNTG2syntrophin gamma 229508491367613Human

Position Markers

Peak: (rs62105575)
Human AssemblyChrPosition (strand)Source
GRCh3821,341,624 - 1,341,625RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406917136GWAS566112_Halcohol consumption measurement QTL GWAS566112 (human)4e-08alcohol consumption measurementethanol drink intake rate (CMO:0001407)213416241341625Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS566112_H GCST90132988 Beer or cider consumption (glasses per month) (UKB data field 1578, 4420) 387,404 European ancestry individuals G 0.993408 4E-8 7.398 rs62105575 0.0791029 alcohol consumption measurement (EFO:0007878)
 PMID:32193382
Database Acc Id Source(s)
GWAS Catalog GCST90132988 GWAS Catalog

RGD Curation Notes
Note Type Note Reference