GWAS548327_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS548327_H (heart failure QTL GWAS548327 (human)) Homo sapiens

Symbol: GWAS548327_H
Name: heart failure QTL GWAS548327 (human)
RGD ID: 406899351
Trait: heart failure
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38416,027,243 - 16,027,244RGD_MAPPER_PIPELINEGRCh38
GRCh37416,028,866 - 16,028,867RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1345263PROM1prominin 141596822816084023Human

Position Markers

Peak: (rs1850507)
Human AssemblyChrPosition (strand)Source
GRCh38416,027,243 - 16,027,244RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406899351GWAS548327_Hheart failure QTL GWAS548327 (human)2e-09heart failure41602724316027244Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS548327_H GCST90239776 Heart failure (multivariate analysis) 17,917 African ancestry individuals, 4,293 admixed ancestry individuals, 47,934 East Asian ancestry individuals, 343,120 European ancestry individuals ? NR 2E-9 8.699 rs1850507 0.016851483 heart failure (EFO:0003144)
 PMID:36376295
Database Acc Id Source(s)
GWAS Catalog GCST90239776 GWAS Catalog

RGD Curation Notes
Note Type Note Reference