GWAS546869_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS546869_H (endometriosis QTL GWAS546869 (human)) Homo sapiens

Symbol: GWAS546869_H
Name: endometriosis QTL GWAS546869 (human)
RGD ID: 406897893
Trait: endometriosis
LOD Score: Not Available
P Value: 8.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,159,378 - 22,159,379RGD_MAPPER_PIPELINEGRCh38
GRCh37122,485,871 - 22,485,872RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
endometriosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Endometriosis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs16826658)
Human AssemblyChrPosition (strand)Source
GRCh38122,159,378 - 22,159,379RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406897893GWAS546869_Hendometriosis QTL GWAS546869 (human)0.0000008endometriosis12215937822159379Human
406918760GWAS567736_Hendometriosis QTL GWAS567736 (human)0.000002endometriosis12215937822159379Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS546869_H GCST001894 Endometriosis 1,514 European ancestry cases, 12,660 European ancestry controls G 0.134 8E-7 6.097 rs16826658 1.25 endometriosis (EFO:0001065)
PMID:23472165
GWAS567736_H GCST000721 Endometriosis 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls G 0.523 0.000002 5.699 rs16826658 1.2 endometriosis (EFO:0001065)
PMID:20601957
Database Acc Id Source(s)
GWAS Catalog GCST001894 GWAS Catalog

RGD Curation Notes
Note Type Note Reference