BW132_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
QTL Registration

QTL: BW132_H (Body weight QTL 132 (human)) Homo sapiens

Symbol: BW132_H
Name: Body weight QTL 132 (human)
RGD ID: 1643243
Trait: Body weight
LOD Score: 1.71
P Value: Not Available
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371187,550,288 - 198,611,574RGDGRCh37
Build 361185,816,911 - 196,878,197RGDNCBI36
Cross Type: Not Available
Population Stats: 840 participants from the San Antonio Family Birth Weight Study



Candidate Gene Status
IL10 is a candidate Gene for BW132_H
APOA2 is a candidate Gene for BW132_H
PKLR is a candidate Gene for BW132_H
LMX1A is a candidate Gene for BW132_H

References

References - curated
# Reference Title Reference Citation
1. A quantitative trait locus (QTL) on chromosome 6q influences birth weight in two independent family studies. Arya R, etal., Hum Mol Genet. 2006 May 15;15(10):1569-79. Epub 2006 Apr 12.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (D1S518)
Human AssemblyChrPosition (strand)Source
GRCh371187,550,288 - 187,550,496UniSTS
Build 361185,816,911 - 185,817,119RGD
Celera1160,659,036 - 160,659,232RGD
HuRef1158,784,168 - 158,784,368UniSTS
Marshfield Genetic Map1202.19UniSTS
Marshfield Genetic Map1202.19RGD
deCODE Assembly Map1188.02UniSTS
Whitehead-RH Map1797.5UniSTS
Whitehead-YAC Contig Map1 UniSTS
NCBI RH Map11573.4UniSTS
Flank 2: (D1S1660)
Human AssemblyChrPosition (strand)Source
GRCh371198,611,347 - 198,611,574UniSTS
Build 361196,877,970 - 196,878,197RGD
Celera1171,733,897 - 171,734,129RGD
Cytogenetic Map1q31-q32UniSTS
HuRef1169,778,575 - 169,778,814UniSTS
Marshfield Genetic Map1212.44RGD
Marshfield Genetic Map1212.44UniSTS
deCODE Assembly Map1194.98UniSTS
Whitehead-RH Map1817.0UniSTS
Whitehead-YAC Contig Map1 UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_population 840 participants from the San Antonio Family Birth Weight Study 1642884
qtl_population_details 449 participants from the San Antonio Family Diabetes/Gallbladder Study (SAFDGS) and 391 from the San Antonio Family Heart Study (SAFHS) 1642884
qtl_statistics_details maximum likelihood method using a pedigree-based multipoint variance component approach; multipoint identical by descent (MIBD) matrices were calculated using Markov Chain Monte Carlo (MCMC) methods 1642884