Glom11 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Glom11 (Glomerulus QTL 11) Rattus norvegicus

Symbol: Glom11
Name: Glomerulus QTL 11
RGD ID: 1598832
Previously known as: GIS-m3
Trait: kidney glomerulus morphology trait   (VT:0005325)    
Measurement Type: index of glomerular damage   (CMO:0001135)    
LOD Score: 2.9
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01849,752,721 - 86,965,151RGDRnor5.0
RGSC_v3.41854,435,837 - 87,265,094RGDRGSC3.4
RGSC_v3.11854,509,110 - 87,338,544RGD
Cross Type: intercross
Strains Crossed: SR/JrHsd SS/JrHsd 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
SR/JrHsd  (IEA)
SS/JrHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Sex-specific QTLs and interacting loci underlie salt-sensitive hypertension and target organ complications in Dahl S/jrHS hypertensive rats. Herrera VL, etal., Physiol Genomics. 2006 Aug 16;26(3):172-9. Epub 2006 May 23.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D18Rat80)
Rat AssemblyChrPosition (strand)Source
Rnor_5.01876,168,501 - 76,168,619NCBI
Rnor_5.016593,391 - 593,510NCBI
Rnor_5.01872,252,662 - 72,252,780NCBI
Rnor_5.016593,392 - 593,510NCBI
Rnor_5.01872,252,662 - 72,252,781NCBI
Rnor_5.01876,168,500 - 76,168,619NCBI
RGSC_v3.41876,935,778 - 76,935,896RGD
RGSC_v3.41876,935,779 - 76,935,896UniSTS
RGSC_v3.11877,009,051 - 77,009,169RGD
Celera1872,154,615 - 72,154,732UniSTS
SHRSP x BN Map1847.8399RGD
SHRSP x BN Map1847.8399UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general parental S allele was responsible for increased trait 1581737
qtl_general 8% NaCl diet was started at 12 weeks of age and given for 8 weeks 1581737