Syncq7_m QTL Report (Mus musculus) - Rat Genome Database

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QTL Registration

QTL: Syncq7_m (synovial calcification QTL 7 (mouse)) Mus musculus

Symbol: Syncq7_m
Name: synovial calcification QTL 7 (mouse)
RGD ID: 14700781
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm39960,460,283 - 61,397,282MOUSEQTLGRCm39
GRCm38960,553,000 - 61,490,000MOUSEQTLGRCm38
cM Map9syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:25989359  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1552098Lrrc49leucine rich repeat containing 4996049450760595460Mouse
1551190Larp6La ribonucleoprotein 6, translational regulator96062040460646084Mouse
401717432LOC131375879STARR-seq mESC enhancer starr_2432396063988160641359Mouse
401704251LOC131375880STARR-seq mESC enhancer starr_2432496065482360656322Mouse
16118361700036A12RikRIKEN cDNA 1700036A12 gene96067519160677558Mouse
401709777LOC131375881STARR-seq mESC enhancer starr_2432596069465260696138Mouse
1558458Uacauveal autoantigen with coiled-coil domains and ankyrin repeats96070048860787713Mouse
1616027Gm9869predicted gene 986996072706960745324Mouse
401709531LOC131375882STARR-seq mESC enhancer starr_2432796072820260730284Mouse
401835233LOC132440636STARR-positive B cell enhancer ABC_E289296076590860766209Mouse
9629430Gm33643predicted gene, 3364396077196560775710Mouse
401704394LOC131375883STARR-seq mESC enhancer starr_2432896081599560816999Mouse
15022686Gm51680predicted gene, 5168096089532460940947Mouse
163655734LOC128926166CapStarr-seq enhancer MGSCv37_chr9:60839449-6083960296089892460899077Mouse
163682575LOC128926167CapStarr-seq enhancer MGSCv37_chr9:60846829-6084693896090630460906680Mouse
39130403Gm57535predicted gene, 5753596092071260923271Mouse
2302490Gm5122predicted gene 512296092435160927079Mouse
9628771Gm33699predicted gene, 3369996093951360964205Mouse
401832710LOC132440637STARR-positive B cell enhancer ABC_E674596095379260954093Mouse
10017406Gm39348predicted gene, 3934896095868160963159Mouse
401840262LOC132440638STARR-positive B cell enhancer ABC_E674696096163060961931Mouse
163710206LOC128926168CapStarr-seq enhancer MGSCv37_chr9:60904552-6090473996096402760964214Mouse
12793708Gm46116predicted gene, 4611696096440260966468Mouse
401712341LOC131375884STARR-seq mESC enhancer starr_2433096096686660967898Mouse
9665593Gm34004predicted gene, 3400496098916261025200Mouse
163696395LOC128926169CapStarr-seq enhancer MGSCv37_chr9:60932776-6093297796099225160992452Mouse
16119224933433G08RikRIKEN cDNA 4933433G08 gene96101029461012668Mouse
9596787Gm33914predicted gene, 3391496101690461033330Mouse
163685897LOC128926170CapStarr-seq enhancer MGSCv37_chr9:60978801-6097901096103827661038485Mouse
401712250LOC131375885STARR-seq mESC enhancer starr_2433296104093361043651Mouse
1610951I730028E13RikRIKEN cDNA I730028E13 gene96104579761052541Mouse
9613832Gm34105predicted gene, 3410596111396161120197Mouse
401837032LOC132440639STARR-positive B cell enhancer ABC_E1055496114956761149867Mouse
39128701Gm53530predicted gene, 5353096115351161157859Mouse
15020904Gm51682predicted gene, 5168296116473461170544Mouse
3740774B930092H01RikRIKEN cDNA B930092H01 gene96116650961201091Mouse
15020964Gm51681predicted gene, 5168196119081161192731Mouse
9671627Gm34264predicted gene, 3426496121956761235895Mouse
15017976Gm51683predicted gene, 5168396122105261222007Mouse
39128865Gm57539predicted gene, 5753996122878661228833Mouse
10021514Gm39349predicted gene, 3934996124676561256010Mouse
9609526Gm34157predicted gene, 3415796127588461277783Mouse
401836309LOC132440640STARR-positive B cell enhancer ABC_E13596127771561278016Mouse
1624712Gm10655predicted gene 1065596127815961279473Mouse
401836523LOC132440641STARR-positive B cell enhancer ABC_E71296127939161279692Mouse
733929Tle3transducin-like enhancer of split 396127960861325779Mouse
401709450LOC131375886STARR-seq mESC enhancer starr_2434596129195961294488Mouse
401713929LOC131375887STARR-seq mESC enhancer starr_2434696130545361307402Mouse
163686744LOC128926171CapStarr-seq enhancer MGSCv37_chr9:61274881-6127516796133435661334642Mouse
401840021LOC132440642STARR-positive B cell enhancer mm9_chr9:61279693-6127999396133916861339468Mouse
9627691Gm34322predicted gene, 3432296134997361363216Mouse
401701254LOC131375888STARR-seq mESC enhancer starr_2434896137708161379663Mouse
401832507LOC132440643STARR-positive B cell enhancer ABC_E829496138625961386560Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94942029863239852Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
1301287Feml2_mfemur length in high growth mice 2 (mouse)Not determined95750728363207282Mouse
1301965Vmbic5_mventral midbrain iron content 5 (mouse)Not determined95759149265831177Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95780504771481754Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
13525007Lfhrvq1_mlow frequency time index heart rate varaiblity, QTL 1 (mouse)95878431868556008Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
14700781Syncq7_msynovial calcification QTL 7 (mouse)96046028361397282Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:6342096 MouseQtl