Syncq3_m QTL Report (Mus musculus) - Rat Genome Database

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QTL: Syncq3_m (synovial calcification QTL 3 (mouse)) Mus musculus

Symbol: Syncq3_m
Name: synovial calcification QTL 3 (mouse)
RGD ID: 14700780
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm391155,424,746 - 156,585,570MOUSEQTLGRCm39
GRCm381155,549,000 - 156,758,000MOUSEQTLGRCm38
cM Map1syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:25989359  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1312818Acbd6acyl-Coenzyme A binding domain containing 61155433845155564120Mouse
1550857Cep350centrosomal protein 3501155720710155848976Mouse
1317586Lhx4LIM homeobox protein 41155573777155627481Mouse
731039Soat1sterol O-acyltransferase 11156255678156301898Mouse
1320813Tor3atorsin family 3, member A1156481187156501909Mouse
10053Abl2ABL proto-oncogene 2, non-receptor tyrosine kinase1156386160156477189Mouse
1621224Fam163afamily with sequence similarity 163, member A1155951702156033027Mouse
1619082Axdnd1axonemal dynein light chain domain containing 11156157985156248743Mouse
1322475Fam20bFAM20B, glycosaminoglycan xylosylkinase1156506127156547204Mouse
1622136Tor1aip1torsin A interacting protein 11155880328155912226Mouse
732449Nphs2nephrosis 2, podocin1156138105156155605Mouse
1621295Tor1aip2torsin A interacting protein 21155911410155944607Mouse
2307610Rpl35rtribosomal protein L35, retrotransposed1156193610156194054Mouse
69036Qsox1quiescin Q6 sulfhydryl oxidase 11155653901155688645Mouse
1623822Tdrd5tudor domain containing 51156082866156131874Mouse
3808665Csnk2a1-ps3casein kinase 2, alpha 1 polypeptide, pseudogene 31156351663156353140Mouse
5143594Gm17975predicted gene, 179751156362674156363205Mouse
9593565Gm30472predicted gene, 304721156040681156051517Mouse
10034010Gm39682predicted gene, 396821156304129156327774Mouse
10036142Gm39683predicted gene, 396831156571974156580831Mouse
15022579Gm51652predicted gene, 516521155770442155775991Mouse
15019923Gm51653predicted gene, 516531155895790155904861Mouse
15000596Gm36934predicted gene, 369341155739798155741344Mouse
14998569Gm23744predicted gene, 237441155830320155830419Mouse
39131031Gm53631predicted gene, 536311155860545155862050Mouse
163701455LOC128924373CapStarr-seq enhancer MGSCv37_chr1:158194711-1581948941156092151156092334Mouse
163689331LOC128924375CapStarr-seq enhancer MGSCv37_chr1:158640993-1586411761156538432156538615Mouse
163653701LOC128924374CapStarr-seq enhancer MGSCv37_chr1:158338195-1583385081156235634156235947Mouse
163653710LOC128924372CapStarr-seq enhancer MGSCv37_chr1:157405138-1574053211155433754155433937Mouse
329963391LOC131296580STARR-seq mESC enhancer starr_027341156077896156080227Mouse
329966360LOC131296585STARR-seq mESC enhancer starr_027531156495798156498151Mouse
329966005LOC131296578STARR-seq mESC enhancer starr_027281155916400155919217Mouse
329965829LOC131296577STARR-seq mESC enhancer starr_027271155592348155593987Mouse
329965926LOC131296584STARR-seq mESC enhancer starr_027421156385600156386524Mouse
329964771LOC131296581STARR-seq mESC enhancer starr_027351156095473156097674Mouse
329964791LOC131296583STARR-seq mESC enhancer starr_027411156349242156350877Mouse
329965208LOC131296579STARR-seq mESC enhancer starr_027331155966757155967701Mouse
329969779LOC131296582STARR-seq mESC enhancer starr_027361156227253156228686Mouse
329968077LOC131296586STARR-seq mESC enhancer starr_027551156504516156505807Mouse
401833250LOC132408203STARR-positive B cell enhancer mm9_chr1:158404407-1584047071156301846156302146Mouse
401834402LOC132408204STARR-positive B cell enhancer ABC_E100491156442014156442314Mouse
401832739LOC132408200STARR-positive B cell enhancer ABC_E33171156248528156248829Mouse
401837087LOC132408206STARR-positive B cell enhancer ABC_E43631156502324156502625Mouse
401836734LOC132408198STARR-positive B cell enhancer mm9_chr1:157659814-1576601151155688430155688731Mouse
401834883LOC132408201STARR-positive B cell enhancer ABC_E94851156264885156265185Mouse
401837506LOC132408205STARR-positive B cell enhancer ABC_E43621156443177156443478Mouse
401839739LOC132408196STARR-positive B cell enhancer ABC_E94841155451016155451316Mouse
401841006LOC132408202STARR-positive B cell enhancer ABC_E25711156287249156287550Mouse
401841909LOC132408199STARR-positive B cell enhancer ABC_E91861155848923155849223Mouse
401841929LOC132408197STARR-positive B cell enhancer mm9_chr1:157423836-1574241361155452452155452752Mouse
401841998LOC132408207STARR-positive B cell enhancer mm9_chr1:158682524-1586828251156579963156580264Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
1301135Pas8_mpulmonary adenoma susceptibility 8 (mouse)Not determined1147125258158233272Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
12903996Cfq5_mconditioned fear QTL 5 (mouse)1150606337159307464Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
14700780Syncq3_msynovial calcification QTL 3 (mouse)1155424746156585570Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1300611Tlln_mtail length (mouse)Not determined1155837814159390372Mouse
4141075Bmd1a_mbone mineral density 1a (mouse)Not determined1155837814162145325Mouse
13452393Ity3b_mimmunity to S. typhimurium 3b (mouse)1156497439172097436Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:6342091 MouseQtl