Hcga4b_m QTL Report (Mus musculus) - Rat Genome Database

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QTL: Hcga4b_m (home cage activity 4b (mouse)) Mus musculus

Symbol: Hcga4b_m
Name: home cage activity 4b (mouse)
RGD ID: 12910776
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386104,503,360 - 110,960,065MOUSEQTLGRCm38
cM Map6syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
1. Mouse Genome Database (MGD)
Additional References at PubMed
PMID:24781804  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68660Bhlhe40basic helix-loop-helix family, member e406108660629108666925Mouse
62300Cntn6contactin 66104492662104863406Mouse
1553352Sumf1sulfatase modifying factor 16108107021108185591Mouse
1557813Edem1ER degradation enhancer, mannosidase alpha-like 16108824045108859356Mouse
1557347Grm7glutamate receptor, metabotropic 76110645349111567230Mouse
1551562Crbncereblon6106778244106800099Mouse
1558346SetmarSET domain without mariner transposase fusion6108065045108077127Mouse
16073810610040F04RikRIKEN cDNA 0610040F04 gene6108577036108660934Mouse
1557806Trnt1tRNA nucleotidyl transferase, CCA-adding, 16106769138106782474Mouse
16091194833447P13RikRIKEN cDNA 4833447P13 gene6108657906108659913Mouse
10821Itpr1inositol 1,4,5-trisphosphate receptor 16108213083108551116Mouse
1617822Gm6749predicted pseudogene 67496108880794108882707Mouse
735277Cntn4contactin 46105677632106700141Mouse
1557811Arl8bADP-ribosylation factor-like 8B6108783059108823723Mouse
735922Il5rainterleukin 5 receptor, alpha6106710375106749037Mouse
1557480Lrrn1leucine rich repeat protein 1, neuronal6107529726107570228Mouse
2299288Rpl36-ps12ribosomal protein L36, pseudogene 126108140120108140509Mouse
2299289Gm4602predicted gene 46026105531468105531928Mouse
2295624Gm16433predicted gene 164336108563449108565693Mouse
2294454Gm6064predicted gene 60646107093457107094222Mouse
2310689Gm5315predicted gene 53156105063133105065167Mouse
2309128Gm4605predicted gene 46056109443600109444226Mouse
3739917Vmn1r-ps38vomeronasal 1 receptor, pseudogene 386107864522107865343Mouse
3739918Vmn1r-ps37vomeronasal 1 receptor, pseudogene 376107863308107863746Mouse
5136183Gm19757predicted gene, 197576105481266105492668Mouse
5142513Gm19039predicted gene, 190396110378080110378628Mouse
5142374Gm19177predicted gene, 191776107881092107881673Mouse
9630183Gm35359predicted gene, 353596108717531108731381Mouse
9632810Gm35017predicted gene, 350176107802725107815057Mouse
9615242Gm35467predicted gene, 354676109739812109750328Mouse
9602235Gm20387predicted gene 203876110627715110645400Mouse
9604013Gm35165predicted gene, 351656108450932108472606Mouse
9672667Gm15631predicted gene 156316105672338105677581Mouse
9677723Gm35417predicted gene, 354176108802410108828276Mouse
9669725Mir7661microRNA 76616108489743108489803Mouse
9652647Gm34933predicted gene, 349336107182063107194586Mouse
9662628Gm29781predicted gene, 297816109125516109126254Mouse
9663516Gm32858predicted gene, 328586109203981109214861Mouse
9643463Gm34873predicted gene, 348736106972266106994666Mouse
10013596Gm38872predicted gene, 388726108212256108212918Mouse
10016595Gm40393predicted gene, 403936104865609104876277Mouse
10033097Gm38871predicted gene, 388716104600680104609471Mouse
15002705Gm22418predicted gene, 224186107001452107001558Mouse
15000597Gm44040predicted gene, 440406108519029108535755Mouse
14999746Gm23339predicted gene, 233396105232606105232743Mouse
39130237Gm51409predicted gene, 514096108791142108812508Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
4895067AI2671181096108609732108609840Mouseregion
4900202RH1275252026106779002106779203Mouseregion
4900569RH1293251776108859134108859310Mouseregion
4903909AI8515731156108107330108107444Mouseregion
4903911AW108261836106780569106780651Mouseregion
4902054AI987788896106782334106782422Mouseregion
491477327.MHAa93g3.seq1676104589175104589341Mouseregion
491492329.MHAa64g5.seq1566107576932107577085Mouseregion
491496129.MMHAP47FLB5.seq1736105235375105235547Mouseregion
491595940.MMHAP28FLF4.seq1566105171955105172110Mouseregion
4909459M-107011666109911016109911181Mouseregion
491363314.MMHAP17FE2.seq1786108137648108137825Mouseregion
491533333.MMHAP69FLC6.seq1686108305134108305301Mouseregion
491601141.MHAa63d5.seq1516107473641107473791Mouseregion
4917566MHAa43h8.seq1516105343526105343676Mouseregion
4908279D45913816107569755107569835Mouseregion
4918988X990431986106674045106674241Mouseregion
4917996MHAa84g5.seq1666107323339107323504Mouseregion
491446523.MMHAP7FLH2.seq1636108464172108464334Mouseregion
491537534.MMHAP12FRD10.seq1996107932183107932382Mouseregion
4946753UniSTS:2355152476108859027108859273Mouseregion
4946755UniSTS:2355141576108565163108565319Mouseregion
4928276D6Mit1041446110959922110960065Mouseregion
4928363D6Mit1481396110784293110784431Mouseregion
4928365D6Mit1491996106005405106005603Mouseregion
4928734D6Mit3271256109332676109332800Mouseregion
4928772D6Mit352226107426421107426642Mouseregion
4928824D6Mit372506105564822105565071Mouseregion
4928857D6Mit391406106569226106569365Mouseregion
4933132AI4631022316108107124108107354Mouseregion
4933134AU0434151446105178261105178406Mouseregion
4946757UniSTS:23551606108857388108857636Mouseregion
4937034RH1247061296106782202106782330Mouseregion
4937581RH1249792316108845982108846212Mouseregion
4928639D6Mit2861186106450231106450346Mouseregion
4928445D6Mit1921926106058834106059025Mouseregion
4928798D6Mit361966104503360104503555Mouseregion
4942915D6Dcr231016110045948110046048Mouseregion
4933136D902051226106711966106712087Mouseregion
493313811.MMHAP84FLD2.seq1056109859648109859752Mouseregion
4963108UniSTS:2242371866109160918109161103Mouseregion
4954201D6Mit1052376107795610107795846Mouseregion
4964727UniSTS:2251211826108739197108739378Mouseregion
4963687UniSTS:2245511806109278437109278616Mouseregion
4964300UniSTS:2248831626108593709108593870Mouseregion
4955363RH1259922336106782216106782448Mouseregion
5009265D6Mit3441456108969344108969488Mouseregion
5009270D6Mit3761936105354237105354429Mouseregion
5002720stSG63350706108620304108621615Mouseregion
4979304Crbn1016106794293106795050Mouseregion
5010969Itpr11266108550828108550953Mouseregion
4971394Il5ra2766106712068106712343Mouseregion
4973432Lrrn19826107567480107568461Mouseregion
5494437stSG6216149586107233839107234796Mouseregion

QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103777444136423692Mouse
1300958Tmevd1_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 1 (mouse)Not determined6104503360106005603Mouse
12910776Hcga4b_mhome cage activity 4b (mouse)6104503360110960065Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104503360127042975Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104503360136423692Mouse
1357793Pnhdlc1_mplasma non-HDL cholesterol 1 (mouse)Not determined6105564822114368849Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined106005405120917141Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110838217144838360Mouse
12910774Hcga4c_mhome cage activity 4c (mouse)6110959922112581887Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:5902024 MouseQtl