Hprt Marker Search Result - Rat Genome Database

Symbol:

Hprt

Previously known as:

RGD ID:

7193113

Expected Size:

425 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	392,862 - 393,274 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	388,997 - 389,408	NCBI	Rnor6.0
Rnor_5.0	X	385,471 - 385,882	UniSTS	Rnor5.0
Celera	X	990,176 - 990,587	UniSTS
Cytogenetic Map	X	q36	UniSTS

Is Marker For:

Genes: Hprt1 Hprt1-ps4

Annotation

References - curated

#	Reference Title	Reference Citation
1.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	CCTGCTGGATTACATTAAAGCACTG
Reverse Primer	AGGCTTTGTATTTGGCTTTTCC

Region

Genes in Region

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
1596190	Hprt1-ps4	hypoxanthine phosphoribosyltransferase 1, pseudogene 4	X	392548	393276	Rat

Nucleotide Sequences


RefSeq Transcripts	NM_012583.2	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003752155.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC098629.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH619719.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M63983.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M86443.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X62085.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message