Pcna-ps2 Marker Search Result - Rat Genome Database

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Marker: Pcna-ps2

Symbol: Pcna-ps2
Previously known as:
RGD ID: 5501424
Expected Size: 220 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23119,499,612 - 119,501,278 (+)MAPPERmRatBN7.2
Rnor_6.03124,881,272 - 124,882,937NCBIRnor6.0
Rnor_5.03131,376,809 - 131,378,475UniSTSRnor5.0
RGSC_v3.43120,009,289 - 120,010,956UniSTSRGSC3.4
Celera3118,297,141 - 118,298,806UniSTS
Cytogenetic Map3q36UniSTS
Is Marker For: Genes:   Pcna  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAACAGGAGTACAGCTGTGTA
Reverse Primer CAGGCTCATTCATCTCTATGG
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3269Pcnaproliferating cell nuclear antigen3119499039119502911Rat

Nucleotide Sequences
RefSeq Transcripts NM_022381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC060570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y00047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)384091273129091273Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 25737 UniSTS