GDB:177260 Marker Search Result - Rat Genome Database

Symbol:

GDB:177260

Previously known as:

RGD ID:

5500306

Expected Size:

281 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	7	139,647,866 - 139,648,445	NCBI	Rnor5.0
Rnor_5.0	4	29,475,523 - 29,476,477	NCBI	Rnor5.0
Rnor_5.0	4	31,437,598 - 31,438,552	NCBI	Rnor5.0
RGSC_v3.4	4	29,425,991 - 29,426,944	UniSTS	RGSC3.4
RGSC_v3.4	7	136,680,091 - 136,680,669	UniSTS	RGSC3.4
Celera	4	27,980,077 - 27,981,030	UniSTS
Celera	7	125,590,621 - 125,591,199	UniSTS
Cytogenetic Map	4	q13	UniSTS
Cytogenetic Map	7	q36	UniSTS

Is Marker For:

Genes: Col2a1 Col1a2 LOC100911218

Annotation

References - curated

#	Reference Title	Reference Citation
1.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence

Region

Nucleotide Sequences


RefSeq Transcripts	NM_012929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_053356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003749690.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003749691.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF121217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC108298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH614516.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L48440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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