AU048560 Marker Search Result - Rat Genome Database

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Marker: AU048560

Symbol: AU048560
Previously known as:
RGD ID: 5088423
Expected Size: 258 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22751,106 - 751,362 (-)MAPPERmRatBN7.2
mRatBN7.2228,789 - 29,041 (+)MAPPERmRatBN7.2
Rnor_6.07503,355 - 503,605NCBIRnor6.0
Rnor_6.0722,393,702 - 22,393,953NCBIRnor6.0
Rnor_5.07503,806 - 504,056UniSTSRnor5.0
Rnor_5.0722,559,955 - 22,560,206UniSTSRnor5.0


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCGATCTGCCCTTTTCTTTCT
Reverse Primer CTCCCAGCTACTGGGGGTT
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41035327LOC1201011645.8S ribosomal RNA26172761880Rat
11451091LOC108351591uncharacterized LOC108351591278346142640Rat
1590774Eif4g2l1eukaryotic translation initiation factor 4, gamma 2 like 127938582070Rat
40949604LOC1201011975.8S ribosomal RNA2372751372904Rat
41023188LOC120101110U2 spliceosomal RNA2557346557461Rat
41361939LOC1201011205.8S ribosomal RNA2590062590215Rat
40964049LOC1201011535.8S ribosomal RNA2719524719677Rat
41275654Ube2v1-ps16ubiquitin conjugating enzyme E2 V1, pseudogene 162729095738261Rat



QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat


Additional Information

Database Acc Id Source(s)
UniSTS 145010 UniSTS