BF397576 Marker Search Result - Rat Genome Database

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Marker: BF397576

Symbol: BF397576
Previously known as:
RGD ID: 5062212
Expected Size: 238 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29107,836,365 - 107,836,603 (+)MAPPERmRatBN7.2
Rnor_6.09116,061,011 - 116,061,248NCBIRnor6.0
Rnor_5.09115,550,520 - 115,550,757UniSTSRnor5.0
RGSC_v3.49107,000,040 - 107,000,277UniSTSRGSC3.4
Celera9104,996,352 - 104,996,589UniSTS
Cytogenetic Map9q37UniSTS
Is Marker For: Genes:   Arhgap28  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CGTTAGCATAGCGGTACAGTGC
Reverse Primer ACCATAACCCTTTCCTTCCCAT
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1559882Arhgap28Rho GTPase activating protein 289107832584107998030Rat

Nucleotide Sequences
GenBank Nucleotide CH474043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 301709 UniSTS
UniSTS 246235 UniSTS