AW533996 Marker Search Result - Rat Genome Database

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Marker: AW533996

Symbol: AW533996
Previously known as:
RGD ID: 5061884
Expected Size: 157 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.214103,258,046 - 103,258,203 (+)MAPPERmRatBN7.2
Rnor_6.014113,938,129 - 113,938,285NCBIRnor6.0
Rnor_5.014113,604,508 - 113,604,664UniSTSRnor5.0
RGSC_v3.414110,530,957 - 110,531,113UniSTSRGSC3.4
Celera14102,135,152 - 102,135,308UniSTS
Cytogenetic Map14q22UniSTS
Is Marker For: Genes:   Prorsd1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGACTTACTAGACCTTGGCTGGC
Reverse Primer CATCAACCAGGAAACACATAAGAAA
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1308179Prorsd1prolyl-tRNA synthetase associated domain containing 114103257979103260248Rat

Nucleotide Sequences
RefSeq Transcripts NM_001106022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC167083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 289864 UniSTS
UniSTS 246039 UniSTS