Hprt Marker Search Result - Rat Genome Database

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Marker: Hprt

Symbol: Hprt
Previously known as:
RGD ID: 5035530
Expected Size: 85 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21635,841,080 - 35,841,165 (+)MAPPERmRatBN7.2
Rnor_6.071,511,962 - 1,512,046NCBIRnor6.0
Rnor_6.016320,490 - 320,574NCBIRnor6.0
Rnor_5.071,494,696 - 1,494,780UniSTSRnor5.0
Rnor_5.016320,001 - 320,085UniSTSRnor5.0
RGSC_v3.41638,862,506 - 38,862,590UniSTSRGSC3.4
CeleraX990,176 - 990,587UniSTS
Cytogenetic Map16p11UniSTS
Cytogenetic MapXq36UniSTS
Is Marker For: Genes:   Hprt1   LOC680598   Hprt1-ps1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GCAGTACAGCCCCAAAATGG
Reverse Primer AACAAAGTCTGGCCTGTATCCAA
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1596190Hprt1-ps4hypoxanthine phosphoribosyltransferase 1, pseudogene 4X392548393276Rat

Nucleotide Sequences
RefSeq Transcripts NM_012583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752155.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC098629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH618581.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M63983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M86443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X62085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100911712 UniSTS
  24465 UniSTS
  680598 UniSTS
UniSTS 528044 UniSTS