RH139464 Marker Search Result - Rat Genome Database

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Marker: RH139464

Symbol: RH139464
Previously known as:
RGD ID: 5033613
Expected Size: 194 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21550,671,379 - 50,671,573 (+)MAPPERmRatBN7.2
mRatBN7.21537,033,392 - 37,033,586 (+)MAPPERmRatBN7.2
Rnor_6.01557,404,865 - 57,405,058NCBIRnor6.0
Rnor_6.01545,958,895 - 45,959,088NCBIRnor6.0
Rnor_5.01561,115,835 - 61,116,028UniSTSRnor5.0
Rnor_5.01549,724,925 - 49,725,118UniSTSRnor5.0
RGSC_v3.41542,042,732 - 42,042,925UniSTSRGSC3.4
RGSC_v3.41556,219,137 - 56,219,330UniSTSRGSC3.4
Celera1550,302,359 - 50,302,552UniSTS
Celera1536,719,511 - 36,719,704UniSTS
Cytogenetic Map15q11UniSTS
Is Marker For: Genes:   Zc3h13  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGTTTCCTTGTGAAGACTGCCT
Reverse Primer CCTGCTCTTCCAGCCTATGAAT
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
61809Gfra2GDNF family receptor alpha 2154594184146033715Rat
619797Cysltr2cysteinyl leukotriene receptor 2154818947648228750Rat
2607Fgf17fibroblast growth factor 17154571149845717622Rat
61800Htr2a5-hydroxytryptamine receptor 2A154995003550022188Rat
3907Cluclusterin154016106840200315Rat
69299Adam2ADAM metallopeptidase domain 2154024265140284025Rat
2665Gata4GATA binding protein 4153745960137531291Rat
2720Gnrh1gonadotropin releasing hormone 1154197248241976690Rat
62065Extl3exostosin-like glycosyltransferase 3153929403339384086Rat
2545Egr3early growth response 3154515033545156052Rat
3666Sftpcsurfactant protein C154559656545599615Rat
628814Fzd3frizzled class receptor 3153942136639488369Rat
620732Ephx2epoxide hydrolase 2154028990140327632Rat
620739Bmp1bone morphogenetic protein 1154555160345595862Rat
621458Neflneurofilament light chain154230192042305793Rat
621354Bnip3lBCL2 interacting protein 3 like154117459441197730Rat
61834Fdft1farnesyl diphosphate farnesyl transferase 1153741214337440198Rat
620701Gulogulonolactone (L-) oxidase154020567740227766Rat
621616Ppp3ccprotein phosphatase 3 catalytic subunit gamma154528991745362012Rat
3362Pnocprepronociceptin153962463539652463Rat
620919Ppp2r2aprotein phosphatase 2, regulatory subunit B, alpha154120465941263924Rat
621509Ctsbcathepsin B153738963637410508Rat
69349Stmn4stathmin 4154054130540559253Rat
70979Msramethionine sulfoxide reductase A153836345938677406Rat
620727Itm2bintegral membrane protein 2B154854599848568904Rat
3160Nefmneurofilament medium chain154236044942365753Rat
628758Ptk2bprotein tyrosine kinase 2 beta154036072240481235Rat
621533Chrna2cholinergic receptor nicotinic alpha 2 subunit154034231740358601Rat
621776Stc1stanniocalcin 1154429959144311695Rat
1304929Rubcnlrubicon like autophagy enhancer155033245850377494Rat
71035Cpb2carboxypeptidase B2155055772250606569Rat
728301Anxa2-ps1annexin A2, pseudogene1153978784439789055Rat
727820Adam28ADAM metallopeptidase domain 28154377446343840726Rat
2517Dpysl2dihydropyrimidinase-like 2154100555141111724Rat
620634HrHR, lysine demethylase and nuclear receptor corepressor154562683545646313Rat
2055Adra1aadrenoceptor alpha 1A154083012540935902Rat
1303307Kif13bkinesin family member 13B153890825739066021Rat
62032Adam7ADAM metallopeptidase domain 7154283379642882201Rat
3540Rb1RB transcriptional corepressor 1154837129548502473Rat
1304736Fndc3afibronectin type III domain containing 3a154768990947867354Rat
735048Rcbtb2RCC1 and BTB domain containing protein 2154831980948364441Rat
1305049Fbxo16F-box protein 16153949226839541493Rat
1308859BlkBLK proto-oncogene, Src family tyrosine kinase153762674637665053Rat
1306539Scara5scavenger receptor class A, member 5153988001739985007Rat
1307689Ccdc25coiled-coil domain containing 25154005536840087758Rat
1306561Reep4receptor accessory protein 4154562031745623524Rat
1307026Slc39a14solute carrier family 39 member 14154537680645423549Rat
1307729Zc3h13zinc finger CCCH type containing 13155060733550671802Rat
727816Npm2nucleophosmin/nucleoplasmin 2154572228245729336Rat
1307337Wdfy2WD repeat and FYVE domain containing 2153708384237209559Rat
1309511Entpd4ectonucleoside triphosphate diphosphohydrolase 4154463087844658654Rat
1305369Nkx3-1NK3 homeobox 1154447385144476443Rat
1306787Hmbox1homeobox containing 1153906780539200633Rat
1309269Scara3scavenger receptor class A, member 3154013987340172866Rat
1308435Loxl2lysyl oxidase-like 2154468344944773067Rat
1311003Cdca2cell division cycle associated 2154189594641942226Rat
1311539Ints9integrator complex subunit 9153920054139284858Rat
1312010Kctd9potassium channel tetramerization domain containing 9154194216541969862Rat
1559641Defb30defensin beta 30153729471337298474Rat
1306872Dock5dedicator of cytokinesis 5154197972842158733Rat
1311079Lgi3leucine-rich repeat LGI family, member 3154560561145612739Rat
1310805Ebf2EBF transcription factor 2154143550941634403Rat
1310719Xkr6XK related 6153785709638059699Rat
1359203Pdlim2PDZ and LIM domain 2154523542145250187Rat
1310928Xpo7exportin 7154574205345828050Rat
1312033Neil2nei-like DNA glycosylase 2153744467637454863Rat
1359361Slc25a37solute carrier family 25 member 37154453428044576697Rat
1559507Lrrc63leucine rich repeat containing 63155040019950437321Rat
1310966Dok2docking protein 2154582698445841409Rat
1310303Esco2-ps2establishment of cohesion 1 homolog 2 (S. cerevisiae), pseudogene 2155045229150455762Rat
1309922Ccar2cell cycle and apoptosis regulator 2154521279745228001Rat
1309924Rhobtb2Rho-related BTB domain containing 2154486825144888436Rat
1305790Phyhipphytanoyl-CoA 2-hydroxylase interacting protein154553397445545223Rat
1308292Nudt15nudix hydrolase 15154870777648713847Rat
1311419Dmtndematin actin binding protein154567797445702261Rat
1309397Sucla2succinate-CoA ligase ADP-forming subunit beta154875235648805495Rat
1308041Tnfrsf10bTNF receptor superfamily member 10b154484038644868318Rat
1310214TdhL-threonine dehydrogenase153773982337753365Rat
1309480Ints6integrator complex subunit 6153690896637048043Rat
1306964Piwil2piwi-like RNA-mediated gene silencing 2154543140245498034Rat
1306671Med4mediator complex subunit 4154869654248706818Rat
1308253Bin3bridging integrator 3154517372545212607Rat
1309861Adamdec1ADAM-like, decysin 1154290062942921684Rat
1307849Zfp395zinc finger protein 395153958160339621911Rat
1308779Chmp7charged multivesicular body protein 7154479098344806216Rat
1308288Lcp1lymphocyte cytosolic protein 1155044330050544682Rat
1309565PbkPDZ binding kinase154002287340034014Rat
1308870Fhip2bFHF complex subunit HOOK interacting protein 2B154565664145674603Rat
1307266Pnma2PNMA family member 2154111194241119649Rat
1306149Nkx2-6NK2 homeobox 6154444315144447248Rat
1310038Sox7SRY-box transcription factor 7153818050338187264Rat
1565212C15h8orf74similar to human chromosome 8 open reading frame 74153820886438225737Rat
1562179Defb44defensin beta 44153731188837313579Rat
1560445Defb42defensin beta 42153723466237241621Rat
1562459Defb41defensin beta 41153725499537259066Rat
1566025Pinx1PIN2/TERF1 interacting, telomerase inhibitor 1153809789638157143Rat
628900Sorbs3sorbin and SH3 domain containing 3154525292145284758Rat
628840Mtmr9myotubularin related protein 9153776916137791195Rat
1311816Polr3dRNA polymerase III subunit D154551158745516256Rat
1311790R3hcc1R3H domain and coiled-coil containing 1154477455244781864Rat
1311802Nudt18nudix hydrolase 18154565059745653985Rat
1308117C15h8orf58similar to human chromosome 8 open reading frame 58154522861545235274Rat
1586394Wdr82-ps3WD repeat domain 82, pseudogene 3154341167343412761Rat
1586868Prss52protease, serine 52153834448638353316Rat
1586875Prss55serine protease 55153829767438345059Rat
1566135Rpl36-ps13ribosomal protein L36, pseudogene154186037541860709Rat
1566384Defb43defensin beta 43153727188837276782Rat
1562099Nuggcnuclear GTPase, germinal center associated153982185139866122Rat
1561302Fam167afamily with sequence similarity 167, member A153768522137715472Rat
1564642Trim35tripartite motif-containing 35154049369740510246Rat
1566115Synbsyncytin b154458081844588417Rat
1590801Set-ps13Set nuclear proto-oncogene, pseudogene 13154457595444604828Rat
1592172Dpm3-ps1dolichyl-phosphate mannosyltransferase polypeptide 3, pseudogene 1154620271946203082Rat
1592074Slc25a5-ps4solute carrier family 25 member 5, pseudogene 4154809047548091756Rat
1586886Rp1l1RP1 like 1153825990738271269Rat
1595950Lpar6lysophosphatidic acid receptor 6154841654848418357Rat
1593295Pebp4phosphatidylethanolamine binding protein 4154492094645134188Rat
1593306Rpl6-ps13ribosomal protein L6, pseudogene 13154139447441395905Rat
1595678Lrch1leucine rich repeats and calponin homology domain containing 1155007060550249724Rat
1596002Hdac1-ps13Histone deacetylase 1, pseudogene 13154544144345443251Rat
1593230Rps17-ps4ribosomal protein S17, pseudogene 4154431935144319786Rat
1593231Septin2-ps1septin 2, pseudogene 1154376092743762362Rat
1593232Rrs1-ps13ribosome biogenesis regulator 1 homolog, pseudogene 13154372661343728908Rat
1593234Rpl23a-ps2ribosomal protein L23a, pseudogene 2153723868737239254Rat
1592114Esdesterase D155004363450063134Rat
1593313Esco2establishment of sister chromatid cohesion N-acetyltransferase 2154003456640052295Rat
1593317Rps17-ps14ribosomal protein S17, pseudogene 14153982030339820773Rat
2322692Tyw5-ps1tRNA-yW synthesizing protein 5, pseudogene 1154864156848675592Rat
2323508Ube2v1l2ubiquitin conjugating enzyme E2 V1 like 2154313405843134595Rat
2323627Slc25a3-ps1solute carrier family 25 member 3, pseudogene 1154234483742346266Rat
2324506Elp3elongator acetyltransferase complex subunit 3153975463539816482Rat
2325336Mir124-1microRNA 124-1153884201438842098Rat
2325416Mir598microRNA 598153796269237962770Rat
2325539Mir320amicroRNA 320a154551639245516473Rat
2325104Brcc3-ps4BRCA1/BRCA2-containing complex, subunit 3, pseudogene 4154257266442573505Rat
6493460Wdr82-ps4WD repeat domain 82, pseudogene 4154336423643365095Rat
6498506Prss51serine protease 51153833154538337878Rat
7527777LOC102555410uncharacterized LOC102555410154127338141280579Rat
7488975Mir6320microRNA 6320154049308840493208Rat
7528420LOC102549097uncharacterized LOC102549097153814419438160150Rat
7663474LOC102554489uncharacterized LOC102554489153879909838832775Rat
7643541LOC102548944uncharacterized LOC102548944153785793437900079Rat
7630497LOC102550955uncharacterized LOC102550955154490440444907623Rat
7555795Ssxbl1SSX family member B like 1154300099143049036Rat
7571001LOC102552533uncharacterized LOC102552533154658393146598119Rat
7572905LOC102555773uncharacterized LOC102555773154023521640254686Rat
7556177LOC102554416uncharacterized LOC102554416154729087447293379Rat
7599070LOC102546539uncharacterized LOC102546539154983625449851944Rat
7579111LOC102553493uncharacterized LOC102553493153808811538097916Rat
7607976LOC102554953uncharacterized LOC102554953154253481642558018Rat
7707332Rpl7a-ps3ribosomal protein L7a, pseudogene 3154407194944072745Rat
7688592LOC102547539uncharacterized LOC102547539154900298549005197Rat
7726377LOC102550654disintegrin and metalloproteinase domain-containing protein 28-like154294109842996816Rat
7689627LOC102554611uncharacterized LOC102554611154756270447588473Rat
7714091LOC102548615uncharacterized LOC102548615153750585137509705Rat
7738961LOC102554677uncharacterized LOC102554677153882541038845428Rat
7727798Ppp2r1a-ps1protein phosphatase 2 scaffold subunit A alpha, pseudogene 1154018043640182210Rat
7749993Nop53-ps1NOP53 ribosome biogenesis factor, pseudogene 1154006667340068546Rat
9098115LOC103693653uncharacterized LOC103693653154197291341976552Rat
9310814LOC103693704NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial pseudogene154653606246536379Rat
9372988LOC103693868uncharacterized LOC103693868154241026042421631Rat
9259039LOC103693695uncharacterized LOC103693695154489190444896522Rat
9466191Chchd2l2-ps5coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 5154787600447896992Rat
9444731LOC103693807mitochondrial pyruvate carrier 1 pseudogene154532686545328097Rat
11356954LOC108352942uncharacterized LOC108352942155033048850348165Rat
11396216Trnae-uuc6transfer RNA glutamic acid (anticodon UUC) 6154875155848751629Rat
11411643LOC108352940H/ACA ribonucleoprotein complex subunit 3 pseudogene153944620239446408Rat
11392146LOC108352941uncharacterized LOC108352941153996668339974105Rat
11497538LOC10835303660S ribosomal protein L7a pseudogene154424392144244711Rat
11492722LOC108352934uncharacterized LOC108352934154087162040916987Rat
41167588LOC120097028uncharacterized LOC120097028154528131845325187Rat
41356815LOC120097018uncharacterized LOC120097018153939972339411086Rat
41091694LOC120097033uncharacterized LOC120097033154794046147943746Rat
41206635LOC120097026uncharacterized LOC120097026154462418344629951Rat
41326890LOC120097010uncharacterized LOC120097010153717982637188481Rat
41176152LOC120097279U2 spliceosomal RNA154821779648217998Rat
41188357Rpl13a-ps7ribosomal protein L13A, pseudogene 7154975736749758024Rat
41262530Trnap-agg23transfer RNA proline (anticodon AGG) 23154550234045502412Rat
41365366Trmt10a-ps1tRNA methyltransferase 10A, pseudogene 1155055783250569751Rat
41365565LOC12009699160S ribosomal protein L31-like154609440746097323Rat
41264846LOC120097027uncharacterized LOC120097027154511305245150183Rat
41342280LOC120097019uncharacterized LOC120097019153956437639569538Rat
41393057LOC120097017uncharacterized LOC120097017153838579538389490Rat
41154191LOC120097015uncharacterized LOC120097015153790976137960128Rat
41214497LOC120097034uncharacterized LOC120097034154798377547986574Rat
41099915LOC120097031uncharacterized LOC120097031154632591046346326Rat
41289243LOC120097016uncharacterized LOC120097016153826171738265627Rat
41291261LOC120097030uncharacterized LOC120097030154553294545534370Rat
41400303Rps16-ps5ribosomal protein S16, pseudogene 5154228190142282434Rat
41185997Hmgn4-ps7high mobility group nucleosomal binding domain 4, pseudogene 7153917739939177661Rat
41197065LOC120097234U1 spliceosomal RNA154726368547263816Rat
41229601LOC120097103uncharacterized LOC120097103153927429339277305Rat
41293210LOC120097185uncharacterized LOC120097185153986632339871517Rat
41072884LOC12009717260S ribosomal protein L7a-like154218830742189095Rat
41274953LOC120097036uncharacterized LOC120097036154832664748330592Rat
41166600LOC120097025uncharacterized LOC120097025154450623444512838Rat
40973991LOC120097024uncharacterized LOC120097024154266206242704954Rat
40950856LOC120097212small nucleolar RNA SNORA70154549140645491496Rat
41014666Mrpl40-ps2mitochondrial ribosomal protein L40, pseudogene 2154824974248251960Rat
41014734LOC120097012uncharacterized LOC120097012153754999437584179Rat
40979616LOC120097029uncharacterized LOC120097029154543822645458584Rat
40960217LOC120097014uncharacterized LOC120097014153794255737946911Rat
41005955LOC120097229small nucleolar RNA SNORA48154722891747229062Rat
40962006LOC120097013uncharacterized LOC120097013153767434637685394Rat
40988049LOC120097023uncharacterized LOC120097023154262678042631143Rat
41008930LOC120097231small nucleolar RNA SNORA17154178514241785272Rat
41312816Rpl27-ps5ribosomal protein L27, pseudogene 5153704032737044038Rat
41247556LOC120097039uncharacterized LOC120097039155044361550464475Rat
41254752LOC120097032uncharacterized LOC120097032154781997547840863Rat
41332447LOC120097289U4 spliceosomal RNA154880877648808965Rat
41152583LOC120097021uncharacterized LOC120097021154169126041695519Rat
41336942LOC120097038uncharacterized LOC120097038154963351949645203Rat
41225482LOC120097020uncharacterized LOC120097020154037686640380994Rat
41017110LOC120093073uncharacterized LOC120093073154460337744630810Rat
41019314LOC120097037uncharacterized LOC120097037154955623949571826Rat
41045961LOC120097175uncharacterized LOC120097175154763200747636835Rat
41046054LOC120097303U6 spliceosomal RNA155058497450585080Rat
41074143Trnap-agg32transfer RNA proline (anticodon AGG) 32153784763337847713Rat

Nucleotide Sequences
RefSeq Transcripts NM_001170471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide DH757467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154028990149308583Rat
2306968Anxrr23Anxiety related response QTL 234.83reflex trait (VT:0001961)amplitude of the acoustic startle response (CMO:0001520)154063126846187442Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 305955 UniSTS
UniSTS 221550 UniSTS