AW549786 Marker Search Result - Rat Genome Database

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General

Marker: AW549786

Symbol:

AW549786

Also known as:

966373;

RGD ID:

4897718

Expected Size:

89 (bp)

Position

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	17	71,458,380 - 71,458,468	UniSTS	GRCm38
GRCm38	10	128,089,115 - 128,090,063	UniSTS	GRCm38
MGSCv37	17	71,807,720 - 71,807,808	UniSTS	GRCm37
MGSCv37	10	127,526,171 - 127,527,119	UniSTS	GRCm37
Celera	17	75,728,752 - 75,728,840	UniSTS
Celera	10	130,483,851 - 130,484,799	UniSTS
Cytogenetic Map	17	E1.3	UniSTS
Cytogenetic Map	10	D3	UniSTS
Whitehead/MRC_RH	17	832.51	UniSTS

Is Marker For:

Genes: Smchd1 Atp5b Gm4707

Annotation

References - curated


1.	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	GTCCCACCATGTAGAAGGCT
Reverse Primer	GCCCTTGAAGGAGACCATTA

Region

Genes in Region

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
1553193	Smchd1	SMC hinge domain containing 1	17	71344489	71475366	Mouse
2299234	Gm4707	predicted gene 4707	17	71458178	71459899	Mouse
1557957	Atp5b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	10	128083307	128090388	Mouse

Nucleotide Sequences


RefSeq Transcripts	NM_016774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC131120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC166817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF030559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW549786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC018392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC037127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC046616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GL589915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GL593693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301338	Lmr1_m	leishmaniasis resistance 1 (mouse)			Not determined		17	9862411	86688972	Mouse
4142150	Stheal11_m	soft tissue heal 11 (mouse)			Not determined		17	12067324	83054339	Mouse
1300592	Pcyts5_m	plasmacytoma susceptibility 5 (mouse)			Not determined		17	38405886	72405969	Mouse
10755525	Lymph2_m	lymphocyte differential 2 (mouse)					17	38498625	72498625	Mouse
10755534	Lymph4_m	lymphocyte differential 4 (mouse)					17	38498625	72498625	Mouse
4141319	Hmtb8_m	hemostasis and thrombosis rebleeding time 8 (mouse)			Not determined			40227447	74227623	Mouse
15039324	Nmrs48_m	NAFLD-associated magnetic resonance shift 48 (mouse)					17	40632187	74632187	Mouse
26884428	Cvht3_m	cranial vault height 3, 5 week (mouse)					17	46200000	82100000	Mouse
1357754	Ahl3_m	age related hearing loss 3 (mouse)			Not determined		17	49896962	83897108	Mouse
1357532	Bmch7_m	bone mechanical trait 7 (mouse)			Not determined		17	51451430	85451617	Mouse
4141879	Chlq9_m	circulating hormone level QTL 9 (mouse)			Not determined		17	51451430	85451617	Mouse
4141758	Pstc5_m	periosteal circumference 5 (mouse)			Not determined		17	56800656	90800808	Mouse
4141011	Bmd26_m	bone mineral density 26 (mouse)			Not determined		17	56800656	90800808	Mouse
1300735	Pgia20_m	proteoglycan induced arthritis 20 (mouse)			Not determined		17	56800656	90800808	Mouse
1357447	Heal13_m	wound healing/regeneration 13 (mouse)			Not determined		17	56800656	90800808	Mouse
12910536	Nrq8a_m	noise-induced hearing loss resistant QTL 8a (mouse)					17	56800656	90800808	Mouse
12910537	Nrq8_m	noise-induced hearing loss resistant QTL 8 (mouse)					17	56800656	90800808	Mouse
4142201	Obrq15_m	obesity resistance QTL 15 (mouse)			Not determined			57227447	80578347	Mouse
4142414	Pregq4_m	pregnancy QTL 4 (mouse)			Not determined		17	57227447	93199751	Mouse
4141040	Hmtb9_m	hemostasis and thrombosis rebleeding time 9 (mouse)			Not determined			57282094	91282202	Mouse
1301107	Scc4_m	colon tumor susceptibility 4 (mouse)			Not determined		17	61993581	94987271	Mouse
11528551	Sluc32_m	susceptibility to lung cancer 32 (mouse)					17	61993581	94987271	Mouse
1302017	Aliq3_m	acute lung injury QTL 3 (mouse)			Not determined		17	63578119	94987271	Mouse
1301728	Ffal1_m	free fatty acid level 1 (mouse)			Not determined		17	64907509	94987271	Mouse
14928308	Manh82_m	mandible shape 82 (mouse)					17	66007814	94987271	Mouse
4142256	Nilac12_m	nicotine induced locomotor activity 12 (mouse)			Not determined		17	68633891	94987271	Mouse
11039498	Ltpr7b_m	Leishmania tropica response 7b (mouse)					17	70393770	94987271	Mouse
11039499	Ltpr7a_m	Leishmania tropica response 7a (mouse)					17	70393770	94987271	Mouse
11039500	Ltpr7c_m	Leishmania tropica response 7c (mouse)					17	70393770	94987271	Mouse
11039514	Ltpr7_m	Leishmania tropica response 7 (mouse)					17	70393770	94987271	Mouse
27226772	Tibl13_m	tibia length 13, 10 week (mouse)					10	19000000	129800000	Mouse
27095911	Pglq15_m	pelvic girdle length QTL 15, 16 week (mouse)					10	39300000	129800000	Mouse
27226764	Tibl19_m	tibia length 19, 16 week (mouse)					10	39300000	129800000	Mouse
26884405	Huml2_m	humerus length 2, 5 week (mouse)					10	69900000	132500000	Mouse
4142461	Bmd25_m	bone mineral density 25 (mouse)			Not determined		10	97381196	130694993	Mouse
1357544	Vtbt10_m	vertebral trabecular bone trait 10 (mouse)			Not determined		10	97381196	130694993	Mouse
11533919	Mvb4_m	modifier of vibrator 4 (mouse)					3	97381196	130694993	Mouse
11533921	Mvb2_m	modifier of vibrator 2 (mouse)					10	97381196	130694993	Mouse
12880413	V125Dq9_m	vitamin D active form serum level QTL 9 (mouse)					10	97700000	130694993	Mouse
4141402	T2dm1sa_m	type 2 diabetes mellitus 1 in SMXA RI mice (mouse)			Not determined			97922739	130694993	Mouse
11040593	Lmr5e_m	leishmaniasis resistance 5e (mouse)					10	99384730	130694993	Mouse
11040595	Lmr5c_m	leishmaniasis resistance 5c (mouse)					10	99384730	130694993	Mouse
11040597	Lmr5a_m	leishmaniasis resistance 5a (mouse)					10	99384730	130694993	Mouse
1301968	Estq4_m	estradiol regulated response QTL 4 (mouse)			Not determined		10	101150611	130694993	Mouse
1357744	Cfbw4_m	cystic fibrosis body weight 4 (mouse)			Not determined		10	101150611	130694993	Mouse
1301901	Im5_m	immunoregulatory 5 (mouse)			Not determined		10	101661259	130694993	Mouse
4141361	Cfmq3_m	cystic fibrosis modifier QTL 3 (mouse)			Not determined		10	101661259	130694993	Mouse
1300678	Leg2_m	longevity extending gene 2 (mouse)			Not determined		10	102671003	130694993	Mouse
1301895	Exq1_m	exploratory and excitability QTL 1 (mouse)			Not determined		10	103011947	130694993	Mouse
14696727	Kidrq2_m	kidney weight, right QTL 2 (mouse)					10	103066603	130694993	Mouse
4141007	Obrq10_m	obesity resistance QTL 10 (mouse)			Not determined			103407822	130694993	Mouse
4141487	Tgq21_m	triglyceride QTL 21 (mouse)			Not determined			104274116	130694993	Mouse
14746996	Manh69_m	mandible shape 69 (mouse)					10	104927733	130694993	Mouse
1357482	Nhdlq4_m	non-HDL QTL 4 (mouse)			Not determined		10	105205399	130694993	Mouse
1300679	Nociq2_m	nociceptive sensitivity inflammatory QTL 2 (mouse)			Not determined		10	105205399	130694993	Mouse
1302200	Sle12_m	systematic lupus erythematosus susceptibility 12 (mouse)			Not determined		10	105205399	130694993	Mouse
11040594	Lmr5f_m	leishmaniasis resistance 5f (mouse)					10	105343808	130694993	Mouse
11040596	Lmr5d_m	leishmaniasis resistance 5d (mouse)					10	105343808	130694993	Mouse
11040598	Lmr5b_m	leishmaniasis resistance 5b (mouse)					10	105343808	130694993	Mouse
4142089	Obrq9_m	obesity resistance QTL 9 (mouse)			Not determined			108680038	130694993	Mouse
4141153	Ltgq2_m	liver triglyceride QTL 2 (mouse)			Not determined			108680038	130694993	Mouse
11039496	Ltpr5b_m	Leishmania tropica response 5b (mouse)					10	108739225	130694993	Mouse
11041664	Lmr25_m	leishmaniasis resistance 25 (mouse)					10	108739225	130694993	Mouse
11049563	Lmr25a_m	leishmaniasis resistance 25a (mouse)					10	108739225	130694993	Mouse
11049570	Lmr25b_m	leishmaniasis resistance 25b (mouse)					10	108739225	130694993	Mouse
12911218	Frct3a_m	fear conditioning traits 3a (mouse)					10	122950065	129631127	Mouse
12911220	Frct3c_m	fear conditioning traits 3c (mouse)					10	122950065	129631127	Mouse
12879490	Frct3_m	fear conditioning traits 3 (mouse)					10	122950065	129631127	Mouse
12904001	Opfaq10_m	open field activity QTL 10 (mouse)					10	125797802	129630506	Mouse
12911219	Frct3b_m	fear conditioning traits 3b (mouse)					10	127839705	129631127	Mouse
12911221	Frct3d_m	fear conditioning traits 3d (mouse)					10	127839705	129631127	Mouse
12904000	Opfaq7_m	open field activity QTL 7 (mouse)					10	127910449	129630506	Mouse

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100043879	UniSTS
	100534390	UniSTS
	11947	UniSTS
	74355	UniSTS
UniSTS	209334	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: AW549786