D15Rat115 Marker Search Result - Rat Genome Database

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Marker: D15Rat115

Symbol: D15Rat115
Previously known as: R0299-A03; oxsts9621; 
RGD ID: 43039
Expected Size: 326 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01544,740,923 - 44,741,248NCBIRnor5.0
Rnor_5.01544,740,963 - 44,741,248NCBIRnor5.0
RGSC_v3.41539,713,310 - 39,713,669RGDRGSC3.4
RGSC_v3.41539,713,350 - 39,713,669UniSTSRGSC3.4
RGSC_v3.11539,729,010 - 39,729,369RGD
Celera1534,469,746 - 34,470,065UniSTS
RH 3.4 Map15225.5UniSTS
RH 3.4 Map15225.5RGD
RH 2.0 Map15123.1RGD
SHRSP x BN Map1524.1198RGD


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer GGATACTGGGAATGAGGGGT
Reverse Primer CCGATGTGAACTACCACTCAGA
 
Template 
TAGAGGATCCCCACTTTATGGTGACAGATGTTGGGTAAAAGCTTGCCCTTGGGATACTGGGAAT
GAGGGGTTTTATTGAGAACCTAGAACTATTCTGTATTTTAAAAGATGTATTTTTATTTATTTAT
GTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTCATGTAGGTTA
GAAGAGGGGAATGGAGCTCCTGTAACTGGAGATACAGGAGGTTGAAAGTCCTCCTAATGTGTCA
TGGTAGGAATTGAACTTCATGAACTCAGGTCCCCTAGAAGAATCATCAAGGGGTTCTTAACCTC
TGAGCAACCTCTGCCGGCTCCTGTTCTGAATTCGATCTGAGTGGTAGTTCACATCGGTGGGTAC
CGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAT
TCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGNGAGCAAC
TCACATTAATTGNGTTGCGCTCACTGCCCGA

Region

Nucleotide Sequences
GenBank Nucleotide CH474023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
UniSTS 121043 UniSTS