D5Rat214 Marker Search Result - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Marker: D5Rat214

Symbol: D5Rat214
Also known as: R0348-D07; oxsts11108; 
RGD ID: 42730
Expected Size: 229 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.255,622,707 - 5,622,920 (+)MAPPERmRatBN7.2
Rnor_6.055,035,977 - 5,036,189NCBIRnor6.0
Rnor_5.055,004,981 - 5,005,193UniSTSRnor5.0
RGSC_v3.454,824,285 - 4,824,497RGDRGSC3.4
RGSC_v3.454,824,285 - 4,824,497UniSTSRGSC3.4
RGSC_v3.154,824,285 - 4,824,497RGD
Celera55,207,203 - 5,207,415UniSTS
SHRSP x BN Map53.55RGD
SHRSP x BN Map53.55UniSTS


Annotation



Strains and Sequence

Sequence
 
Forward Primer GCCTAGGCTTGACAAGATGC
Reverse Primer GGGGATTGATACTCACCCCT
 
Template
CCTGTCCTGGATGCAATAAATGCCTAGGCTTGACAAGATGCTAACACACACACATACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACATTATAGGTAGAGAATA
AAGGTAAGACGTTTGGGAGAAAAAATTTCTTAGGTGTACACTTGGAAGTTTAGGTGTACATTTG
AAAGTACATTTGAAACTCTTAGGTCTTAGCGGTTGGGTAGGGGTGAGTATCAATCCCCAGGGAC
ACAGGAGAGGAACCCCACCCTACTGGAATGGGTAGTAAGTCGGAACTAGACTATTGATTGGNAT
GTGTACTTAGGGGTACCGAGACTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAAT
TGTTATCCGCNCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTG
CCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCNCACTGCCCGCTTTCCAGTCGGGAAA
CCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGGGTTTGCGTATTGGGC
GCCAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCTGGCC
CGAGAGAGTTGCAGCAAGCGGTCCAGCTGGTTTGCCCCAGCAGGCGAAAATCCTGTTTGATGGT
GGTTCGAATCGGCAATCCTTATANTCANGATAGCCGAATAGGGTTGAGTGTGTTNGTTGGANAG
AGTCCTATTAAGACGTGCTCACGTCAANGGANACGCTTAGGGTGCACTAG

Region

Nucleotide Sequences
GenBank Nucleotide CH473984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631551Vetf1Vascular elastic tissue fragility QTL 150.0001aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)522822265904428Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat


Additional Information

Database Acc Id Source(s)
UniSTS 227912 UniSTS