D4Rat279 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: D4Rat279

Symbol: D4Rat279
Previously known as: R0306-B03; oxsts11000; 
RGD ID: 42728
Expected Size: 110 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.04244,725,088 - 244,725,214NCBIRnor5.0
RGSC_v3.44183,821,280 - 183,821,405RGDRGSC3.4
RGSC_v3.14184,065,955 - 184,066,540RGD
RH 3.4 Map41069.7UniSTS
RH 3.4 Map41069.7RGD
SHRSP x BN Map498.8099RGD
SHRSP x BN Map498.8099UniSTS


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAGCTTTTATCACACCCCAGA
Reverse Primer CTGAGAAAGGCTTTGCCAAG
 
Template 
TCCCCAAATGCTTAGAGCTTTTATCACACCCCAGATACTATAACTACAGCTTCCTTCACACACA
CACACACACACACACACACACACACACACACACACACACCCTTGGCAAAGCCTTTCTCAGCCAC
CCTATTGCCTGAGGTTGGGGTGTTTGCTGAACCTGGATGGGTTGCTTGAGTTACCAGATAGCCA
GTCATTGTCACGGAGTTTATTTAAACATTCGAAATCTTGAAAATGGAACCAGATGGACGGTGAA
GATTATTTTTACTGAGAAAGAGCGAAGTTTCATACCTTGACTTTCTGTATTTGTTTTCATCCCA
GCATGTGTTGTGTTGGGAGCCTCTTTGCTAGTCCTTGTCATGTGGTAGGTGTGTAGTAAATGTC
CTTATAAGTGATAAAATAGGAGTGGGGAGGGAGGGAAAGGGATTGGAAGAGGATTGCCTTGCGT
TGTGTGAATAAATGTTTCTGTTCTAGTCCTCACTTAATTATGTACTTTCCTGATCTTCTAGTTT
ATTTTCAGACAGTCTCACTGTGTAGCCCAGGCTGGCTTGTAGCTTCCTGTAGCTCAGGCTGGGG
GTACCGAGCTCGAATTCGTAATCATGGTCATAGCGTTTCCTGTGTGAAATTGTTATCCGCTCAC
AATTCCACACAACATACGAGCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCAATGAGTGAGCAA
CTCACATTATTGCGTTGGCTCACTGCCGCTTCAGTCGGGAACTGTCGTGCAGCTGCATAATGAT
CGGCACGCGCGGGGAGAGGGNTGGTATGGGGCAGGTGGTTTTCTTCACATGAGNGGCAAGTGAT
GCCTCACGC

Region

Nucleotide Sequences


Additional Information

Database Acc Id Source(s)
UniSTS 227821 UniSTS