D2Rat340 Marker Search Result - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Marker: D2Rat340

Symbol: D2Rat340
Previously known as: R0308-B05; oxsts10600; 
RGD ID: 42597
Expected Size: 202 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02123,360,405 - 123,360,640NCBIRnor6.0
Rnor_5.02142,975,758 - 142,975,970UniSTSRnor5.0
RGSC_v3.42123,147,918 - 123,148,131RGDRGSC3.4
RGSC_v3.42123,147,919 - 123,148,131UniSTSRGSC3.4
RGSC_v3.12123,092,880 - 123,093,093RGD
Celera2114,469,851 - 114,470,051UniSTS
SHRSP x BN Map244.4298UniSTS
SHRSP x BN Map244.4298RGD
Cytogenetic Map2q25UniSTS
Is Marker For: Genes:   Trpc3  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TAGTGTGCATGAAACCCTGC
Reverse Primer AAGGTGCATGCTGTGTCTTG
 

Region

Nucleotide Sequences
GenBank Nucleotide CH473961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 60395 UniSTS
UniSTS 227474 UniSTS