Marker: D11Rat101 |
| Symbol: |
D11Rat101 |
| Previously known as: |
R0296-A02; oxsts9252;
|
| RGD ID: |
41734 |
| Expected Size: |
245 (bp) |
| Position |
| Rat Assembly | Chr | Position (strand) | Source | JBrowse |
|---|
mRatBN7.2 | 11 | 12,831,046 - 12,831,293 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 11 | 11,367,306 - 11,367,552 | NCBI | Rnor6.0 | Rnor_5.0 | 11 | 15,035,502 - 15,035,748 | UniSTS | Rnor5.0 | RGSC_v3.4 | 11 | 12,965,570 - 12,965,817 | RGD | RGSC3.4 | RGSC_v3.4 | 11 | 12,965,571 - 12,965,817 | UniSTS | RGSC3.4 | RGSC_v3.1 | 11 | 12,965,570 - 12,965,817 | RGD | | Celera | 11 | 12,855,183 - 12,855,429 | UniSTS | | RH 2.0 Map | 11 | 663.6 | RGD | | SHRSP x BN Map | 11 | 2.5899 | RGD | | Cytogenetic Map | 11 | p11 | UniSTS | |
|
| Is Marker For: |
Strains:
AVN/Orl
BBDP/Rhw
BBDR/Rhw
BC/CpbU
BDIX/Han
BDVII/Cub
BN/SsNHsd
BP/Cub
BUF/Pit
DA/PitN
DON/Melb
F344/Pit
FHH/Eur
IS/Kyo
LE/Mol
LEW/Pit
LH/Mav
MHS/Gib
MNRA/N
WN/N
WKY/OlaHsd
WTC/Kyo
LOU/CHan
MNR/N
MR/Pit
ODU/N
WF/Pit
WIST/Nhg
SR/Jr
MNS/Gib
NP9
OKA/Wsl
OM/Ztm
P5C
PVG/Pit
SD/Rij
SHR/OlaHsd
SHRSP/Riv
WAG/RijKyo
GK/KyoSwe
M520/N
ACI/N
BN-Lx/Cub
LN/Mav
GH/Omr
NEDH/K
SS/Jr
COP/OlaHsd
QTLs:
Glom10
Scl58
Genes:
Robo2
|
Annotation
References - curated
| # |
Reference Title |
Reference Citation |
| 1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
| 2. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
| 3. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
| 4. |
UniSTS Pipeline |
RGD automated pipelines
|
| 5. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
| 6. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
| |
| Forward Primer |
GAGTGTGGATCCTCGGTAGC |
| Reverse Primer |
TGGTTAAATCAAAGGGGAAA |
| |
| Template |
CGGGNGGGTGNGGTNGNGGGNGNGTNNCGGTGGNNTTGNGTGGNNTGAGGGGNGNGGGNNGGNG
TGCGGGGNNCCNNACCGCTGNGGGNNTCNNNNTCTTGCGTAGCTAGCAGGTCAGACATCATAGA
GGATCCCCAACAAGGTTCTCAGGGGACTTTTTGCTATTGTTTCAGCTTTGTATATGCACGAATG
GATTTCCTGCAAGTGTGTCGGTGTGCCCAGTGAAAGTGAGCATCGAACGAGTGTGGATCCTCGG
TAGCTGGAGTTCCCAGACGGTTGTGGGCCACCATCTGGAAGCTGGGAATCAGAGATGGGTTCCG
CTAGAGGGGAGACAGTGTTCTTTCACCTTTGAACTGATATAACGGCCCTCTATTAAGTATATAT
TTTTAAACTTGTTCATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTATTTCCCCTTTGATTTAACCATTTTTAAGCAGAGTTGGGAAAAGGTCA
CACTGCTTTCTCNCCATGTAAGTCAGTCCCTATAACGATGNTATACTCACTTTCATCGGAACTA
TAAAAGCATCTGTGGGTACCGAGCCGAATTCGTAATCATGGTCATAGCGTTTCCGTGTGAAATT
GTTATCCGCCACAATTCCACACAACATACGAGCGGAAGCATAAAGTGTAAAGCCGGGGTGCCAA
TGAGTGAGCAACCCATAATGGTGGCCACGCCGCTTCCGTGGGAACGTCGGCAGCGATATGATGG
CNGGGNGGAGGGTTGGATGGGCAGGGGTNTCNNNCGGAAGGCAANGATGCNNGNNCCGGAATTN
NCNNGCNNNNTNCNNGGNACNNTNGGNTNNANGAAC
|
Strain Variation
Strain, Expected Size(s)
Region
Genes in Region
| 620167 | Robo2 | roundabout guidance receptor 2 | 11 | 12528949 | 14096726 | Rat | |
QTLs in Region (mRatBN7.2)
| 634341 | Bw121 | Body weight QTL 121 | 3.56 | | abdominal fat pad mass (VT:1000711) | abdominal fat pad weight (CMO:0000088) | 11 | 1 | 21836709 | Rat | | 1598842 | Glom10 | Glomerulus QTL 10 | 3.4 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 11 | 1 | 35331169 | Rat | | 1300147 | Bp187 | Blood pressure QTL 187 | 3.67 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 11 | 1 | 69446234 | Rat | | 1558659 | Tescar1 | Testicular tumor resistance QTL 1 | 3.9 | | testis integrity trait (VT:0010572) | percentage of study population developing testis tumors during a period of time (CMO:0001261) | 11 | 1041931 | 66113562 | Rat | | 1641927 | Alcrsp10 | Alcohol response QTL 10 | | | alcohol metabolism trait (VT:0015089) | blood ethanol level (CMO:0000535) | 11 | 8436674 | 53436674 | Rat | | 2290451 | Scl58 | Serum cholesterol level QTL 58 | 3.48 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 11 | 12831046 | 25121472 | Rat | |
