D10Rat184 Marker Search Result - Rat Genome Database

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General

Marker: D10Rat184

Symbol:

D10Rat184

Previously known as:

R0111-A02; oxsts8705;

RGD ID:

41098

Expected Size:

145 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	10	11,561,841 - 11,561,989	NCBI	Rnor6.0
Rnor_5.0	10	10,319,327 - 10,319,475	UniSTS	Rnor5.0
RGSC_v3.4	10	11,567,780 - 11,567,932	UniSTS	RGSC3.4
RGSC_v3.4	10	11,567,738 - 11,568,211	RGD	RGSC3.4
RGSC_v3.1	10	11,567,780 - 11,567,932	RGD
Celera	10	10,263,351 - 10,263,495	UniSTS
RH 3.4 Map	10	128.25	RGD
RH 3.4 Map	10	128.25	UniSTS
SHRSP x BN Map	10	5.71	UniSTS
SHRSP x BN Map	10	5.71	RGD

Is Marker For:

Strains: ACI/N AVN/Orl BBDR/Rhw BBDP/Rhw BC/CpbU BDIX/Han BDVII/Cub BN-Lx/Cub BN/SsNHsd BP/Cub BUF/Pit COP/OlaHsd DA/PitN FHH/Eur F344/Pit GH/Omr GK/KyoSwe DON/Melb M520/N IS/Kyo WN/N LH/Mav LE/Mol LEW/Pit LOU/CHan LN/Mav MHS/Gib MNR/N MNRA/N MNS/Gib MR/Pit NEDH/K NP9 ODU/N OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv SS/Jr WAG/RijKyo WF/Pit WIST/Nhg WKY/OlaHsd WTC/Kyo DA.PVG.1AV1-(D10Got6-D10Rat184)/Kini

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	TCTCCTCTTTGTCCAGTCCC
Reverse Primer	AAGGACTCAGTACTGCCCCC

Template	GATCCCCCTTGTGACAACCTGAAAGTGAGTAAAGGTTGGTTTCATTGAAGGACTCAGTACTGCC CCCGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCTG TGTGTCTGTGTCTGTGTCTGTGAAAGATGGGACTAAGGAACTAGGGGACTGGACAAAGAGGAGA GACAAAGACAGACAGACAGACAGACAGACAGACACAGAGAGAGACAGAGACAGAGACAGAGACA GACAGAGGTGGGGAGAAAGAGCACAAGGGAGAGGGAGAGGGGAAGGATAGGGGAGGGGGAGGGA GAAAAGAAGGTAGAGAGAGGGAGGAAGAAAGGGGGTGGGAGAGGGAGGGAGAGAGGGACAGAGG GAGGGGAAAAGAGAGAGAGAGAGAGAGAGAGAGANAGAGAGAGAGAGAGAGAGAGAGAGANCTA TANANATTNCATCCTCTCTNNTTTTCTGNNACCTNCCAACTGGTAGACCTATATNTCTCACTAA ANCCTNA

Strain Variation

Strain, Expected Size(s)

ACI/N	144
AVN/Orl	140
BBDP/Rhw	144
BBDR/Rhw	144
BC/CpbU	150
BDIX/Han	150
BDVII/Cub	144
BN-Lx/Cub	152
BN/SsNHsd	152
BP/Cub	150
BUF/Pit	142
COP/OlaHsd	140

DA/PitN	142
DON/Melb	144
F344/Pit	142
FHH/Eur	146
GH/Omr	152
GK/KyoSwe	140
IS/Kyo	146
LE/Mol	144
LEW/Pit	144
LH/Mav	150
LN/Mav	150
LOU/CHan	152

M520/N	144
MHS/Gib	146
MNR/N	144
MNRA/N	152
MNS/Gib	144
MR/Pit	152
NEDH/K	144
NP9	144
ODU/N	144
OKA/Wsl	140
OM/Ztm	148
P5C	144

PVG/Pit	152
SD/Rij	144
SHR/OlaHsd	144
SHRSP/Riv	142
SS/Jr	144
WAG/RijKyo	152
WF/Pit	144
WIST/Nhg	144
WKY/OlaHsd	144
WN/N	144
WTC/Kyo	144

Region

Nucleotide Sequences


GenBank Nucleotide	JH616921.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
UniSTS	226298	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D10Rat184