D9Rat153 Marker Search Result - Rat Genome Database
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Marker: D9Rat153

Symbol: D9Rat153
Also known as: R0254-B07; oxsts11671; 
RGD ID: 40584
Expected Size: 129 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.09107,792,380 - 107,792,516NCBIRnor6.0
Rnor_5.09107,377,021 - 107,377,157UniSTSRnor5.0
RGSC_v3.4999,896,312 - 99,896,713RGDRGSC3.4
RGSC_v3.4999,896,439 - 99,896,575UniSTSRGSC3.4
RGSC_v3.19100,105,792 - 100,106,193RGD
Celera998,443,658 - 98,443,794UniSTS
SHRSP x BN Map970.4699UniSTS
SHRSP x BN Map970.4699RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr  


Annotation



Strains and Sequence

Sequence
 
Forward Primer AGGCTCTCCCAGAGAGAAGG
Reverse Primer TGGTTTATTTATTCATCAGTGAGTG
 
Template
CAAAGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTGAACAATCAAGACCAGA
ACACTAACCGGATTGAGACATGATAATGAGGTAAAGAAAATTCTTATGAGATCCTATCTCTGGA
CAAAGATCAATAAGCCCTTATGACTACAGGGTAAAGGACAGTTAGGCTCTCCCAGAGAGAAGGC
CCTTTGTTGACTTTCAAATGAAAAGTGGCTAGCCTTAAAACCACACACACACACACACACACAC
ACACACACACACACAATTACACTCACTGATGAATAAATAAACCATTACACACACACACACACAC
ACACGCACACACGCACACACACACACACACACACACACACACACACGGATGTGACACAGTAATC
AAATAATCAAAGAGAGAGATACTATCTACTCGAAGAGGTGGGCACATTGGGAGGGGTANGAGCT
CGATTCGTAATCATGGTCANGCTGTATCTGTGTGAATTGTTTCGTCAATTCACANAAATAGAGC
GGANCATAAGTGTAAGNTGGGNGCTATGNTGAANNNNAATAATNGNNCCATGNGTTNATGGAAC
TNGGCACTNNTATGATNNAGNGGNNNGNTGTTGG

Region

Nucleotide Sequences
GenBank Nucleotide CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)929075079122095297Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)929466970107878528Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)963270073107878387Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)966757444112943287Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)970241351115241351Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)970942881115942881Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)981411073119983851Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)983686153111609081Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)990024661119983851Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)999041068107878528Rat
1354645Swd1Spike wave discharge measurement QTL 13.910.00012brain electrophysiology trait (VT:0010557)mean duration of a single type I spike-and-wave discharge train (CMO:0002064)9107198926110038814Rat


Additional Information

Database Acc Id Source(s)
UniSTS 122516 UniSTS