D9Rat109 Marker Search Result - Rat Genome Database

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General

Marker: D9Rat109

Symbol:

D9Rat109

Also known as:

R0231-B12; oxsts7493;

RGD ID:

40510

Expected Size:

150 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	9	107,198,926 - 107,199,079	NCBI	Rnor6.0
Rnor_5.0	9	106,780,549 - 106,780,702	UniSTS	Rnor5.0
RGSC_v3.4	9	100,495,067 - 100,495,220	UniSTS	RGSC3.4
RGSC_v3.4	9	100,495,066 - 100,495,220	RGD	RGSC3.4
RGSC_v3.1	9	100,704,225 - 100,704,716	RGD
Celera	9	99,018,894 - 99,019,047	UniSTS
SHRSP x BN Map	9	70.4499	UniSTS
SHRSP x BN Map	9	70.4499	RGD
FHH x ACI Map	9	81.3	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Swd1 Pur26

Annotation

References - curated


1.	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	CAAGGCTTTCAATGGGTACA
Reverse Primer	GCCTGGAAATTAGCTTGACG

Strain Variation

Strain, Expected Size(s)

ACI/N	145
AVN/Orl	155
BBDP/Rhw	155
BBDR/Rhw	155
BC/CpbU	143
BDIX/Han	145
BDVII/Cub	145
BN-Lx/Cub	155
BN/SsNHsd	155
BP/Cub	145
BUF/Pit	151
COP/OlaHsd	145
DA/PitN	145

DON/Melb	153
F344/Pit	153
FHH/Eur	153
GH/Omr	145
GK/KyoSwe	155
IS/Kyo	153
LE/Mol	155
LEW/Pit	155
LH/Mav	153
LN/Mav	153
LOU/CHan	155
M520/N	145
MHS/Gib	155

MNR/N	147
MNRA/N	143
MNS/Gib	155
MR/Pit	145
NEDH/K	155
NP9	149
ODU/N	145
OKA/Wsl	145
OM/Ztm	153
P5C	153
PVG/Pit	153
SD/Rij	145
SHR/OlaHsd	145

SHRSP/Riv	153
SR/Jr	153
SS/Jr	153
WAG/RijKyo	157
WF/Pit	153
WIST/Nhg	145
WKY/OlaHsd	145
WN/N	155
WTC/Kyo	154

Region

Nucleotide Sequences


GenBank Nucleotide	CH473997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	29466970	107878528	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	90024661	107199079	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	90024661	119983851	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	66757444	112943287	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	81411073	119983851	Rat
1354645	Swd1	Spike wave discharge measurement QTL 1	3.91	0.00012	brain electrophysiology trait (VT:0010557)	mean duration of a single type I spike-and-wave discharge train (CMO:0002064)	9	107198926	110038814	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	99041068	107878528	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	70241351	115241351	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	63270073	107878387	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	29075079	122095297	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	70942881	115942881	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	83686153	111609081	Rat

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100528038	UniSTS
	544538	UniSTS
UniSTS	122489	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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