D11Rat86 Marker Search Result - Rat Genome Database

General

Marker: D11Rat86

Symbol:

D11Rat86

Previously known as:

R0113-B11; oxsts9311;

RGD ID:

39962

Expected Size:

248 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	4,069,994 - 4,070,242 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	3,542,966 - 3,543,213	NCBI	Rnor6.0
Rnor_6.0	11	3,010,838 - 3,011,085	NCBI	Rnor6.0
Rnor_5.0	11	2,990,283 - 2,990,530	UniSTS	Rnor5.0
Rnor_5.0	11	3,518,048 - 3,518,295	UniSTS	Rnor5.0
RGSC_v3.4	11	3,784,587 - 3,784,835	RGD	RGSC3.4
RGSC_v3.4	11	3,784,588 - 3,784,835	UniSTS	RGSC3.4
RGSC_v3.1	11	3,784,587 - 3,784,835	RGD
Celera	11	4,041,722 - 4,041,969	UniSTS
FHH x ACI Map	11	2.2799	RGD
FHH x ACI Map	11	2.2799	UniSTS

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDVII/Cub BN/SsNHsd BP/Cub DON/Melb F344/Pit FHH/Eur IS/Kyo WN/N ODU/N WF/Pit WIST/Nhg SD/Rij GK/KyoSwe M520/N NEDH/K

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	TGGATTGGAAGAAAGAGGGA
Reverse Primer	CTCAGAATGAAGAAATGTGTGTG

Strain Variation

Strain, Expected Size(s)

AVN/Orl	230
BBDP/Rhw	246
BBDR/Rhw	248
BC/CpbU	230
BDVII/Cub	225

BN/SsNHsd	246
BP/Cub	230
DON/Melb	227
F344/Pit	227
FHH/Eur	244

GK/KyoSwe	246
IS/Kyo	235
M520/N	246
NEDH/K	227
ODU/N	246

SD/Rij	227
WF/Pit	227
WIST/Nhg	227
WN/N	227

Region

Nucleotide Sequences


GenBank Nucleotide	JH617176.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	1	21836709	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	1	35331169	Rat
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	69446234	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	1041931	66113562	Rat

Additional Information

External Database Links

Database	Acc Id	Source(s)
UniSTS	120797	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D11Rat86