Marker: D18Rat111 |
| Symbol: |
D18Rat111 |
| Previously known as: |
R0105-A09; oxsts9921;
|
| RGD ID: |
39726 |
| Expected Size: |
249 (bp) |
| Position |
| Rat Assembly | Chr | Position (strand) | Source | JBrowse |
|---|
mRatBN7.2 | 18 | 3,258,004 - 3,258,245 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 18 | 3,499,094 - 3,499,334 | NCBI | Rnor6.0 | Rnor_5.0 | 18 | 3,509,665 - 3,509,905 | UniSTS | Rnor5.0 | RGSC_v3.4 | 18 | 3,606,816 - 3,607,247 | RGD | RGSC3.4 | RGSC_v3.4 | 18 | 3,606,822 - 3,607,062 | UniSTS | RGSC3.4 | RGSC_v3.1 | 18 | 3,606,822 - 3,607,062 | RGD | | Celera | 18 | 3,124,576 - 3,124,816 | UniSTS | | RH 3.4 Map | 18 | 44.3 | RGD | | RH 3.4 Map | 18 | 44.3 | UniSTS | | RH 2.0 Map | 18 | 894.4 | RGD | | SHRSP x BN Map | 18 | 2.52 | RGD | | Cytogenetic Map | 18 | p13 | UniSTS | |
|
| Is Marker For: |
Strains:
AVN/Orl
BBDP/Rhw
BBDR/Rhw
BC/CpbU
BDIX/Han
BDVII/Cub
BN/SsNHsd
BP/Cub
BUF/Pit
DA/PitN
DON/Melb
F344/Pit
FHH/Eur
IS/Kyo
LE/Mol
LEW/Pit
LH/Mav
MHS/Gib
MNRA/N
WN/N
WKY/OlaHsd
WTC/Kyo
LOU/CHan
MNR/N
MR/Pit
ODU/N
WF/Pit
WIST/Nhg
SR/Jr
MNS/Gib
NP9
OKA/Wsl
OM/Ztm
P5C
PVG/Pit
SD/Rij
SHR/OlaHsd
SHRSP/Riv
WAG/RijKyo
GK/KyoSwe
M520/N
ACI/N
BN-Lx/Cub
LN/Mav
GH/Omr
NEDH/K
SS/Jr
COP/OlaHsd
QTLs:
Pigfal19
Scort10
Genes:
Tmem241
|
Annotation
References - curated
| # |
Reference Title |
Reference Citation |
| 1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
| 2. |
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. |
Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
|
| 3. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
| 4. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
| 5. |
UniSTS Pipeline |
RGD automated pipelines
|
| 6. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
| 7. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
| |
| Forward Primer |
AAGCCAGTTCTGCAGTGTCA |
| Reverse Primer |
TTTTAATCCCTGCCTTGTGC |
| |
| Template |
CCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCTGTATTTTAATCCCTGCC
TTGTGCTTTTGCTTTTTTAAAACTGGGATTTCTTAGAACGATGGAGATAGGAAGAGAAAAGGCT
TATGAAAAAGGGGAGGAGTTCAAGCCCTATGTCCCATTATTCAAGAATCTGTAAGTTTGTAAGA
CAGGATTTACACGTTCTCACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACAAAGCATGAACTACATGACACTGCAGAACTGGCTTAGTCCTCTGCATGGGCTTTGT
ACATCTTCCGCATGGGCTTTGTACATCTTCCGCAGTCTTTAAGTGTACAGCCTTCATTACTTTA
ACTTGTAATCCTCTTTTGCTTCTAACTTTAGGAGCATAAAACTTATTGCTCCCATGGCAGGACA
TGGAAACCCCTTTTCCAAGCCAACATGTCTTCTAGG
|
Strain Variation
Strain, Expected Size(s)
Region
Genes in Region
| 1590602 | Tmem241 | transmembrane protein 241 | 18 | 3168072 | 3318340 | Rat | |
QTLs in Region (mRatBN7.2)
| 8552968 | Pigfal19 | Plasma insulin-like growth factor 1 level QTL 19 | 11.4 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 18 | 1 | 25758124 | Rat | | 9590248 | Scort10 | Serum corticosterone level QTL 10 | 19.71 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 18 | 1 | 25758124 | Rat | | 2312598 | Bp340 | Blood pressure QTL 340 | | 0.05 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 18 | 1 | 30558703 | Rat | | 2300180 | Bmd67 | Bone mineral density QTL 67 | 4.8 | 0.0001 | femur mineral mass (VT:0010011) | bone mineral density (CMO:0001226) | 18 | 1 | 34291613 | Rat | | 2293661 | Bss50 | Bone structure and strength QTL 50 | 4.64 | 0.0003 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra trabecular cross-sectional area (CMO:0001692) | 18 | 1 | 34291613 | Rat | | 61388 | Bp2 | Blood pressure QTL 2 | 3.23 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 18 | 1 | 35374722 | Rat | | 9589153 | Insul31 | Insulin level QTL 31 | 7.15 | 0.05 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 18 | 1 | 42547119 | Rat | | 1641910 | Colcr3 | Colorectal carcinoma resistance QTL 3 | 5.02 | 0.000007 | intestine integrity trait (VT:0010554) | poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078) | 18 | 2249477 | 22066430 | Rat | | 1641910 | Colcr3 | Colorectal carcinoma resistance QTL 3 | 5.02 | 0.000007 | intestine integrity trait (VT:0010554) | poorly differentiated malignant colorectal tumor number (CMO:0002076) | 18 | 2249477 | 22066430 | Rat | |
