DXRat83 Marker Search Result - Rat Genome Database

General

Marker: DXRat83

Symbol:

DXRat83

Previously known as:

R0084-B12; oxsts11816;

RGD ID:

39154

Expected Size:

232 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	22,646,312 - 22,646,544 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	24,331,606 - 24,331,837	NCBI	Rnor6.0
Rnor_5.0	X	24,746,073 - 24,746,304	UniSTS	Rnor5.0
RGSC_v3.4	X	43,167,178 - 43,167,410	RGD	RGSC3.4
RGSC_v3.4	X	43,167,179 - 43,167,410	UniSTS	RGSC3.4
RGSC_v3.1	X	43,220,647 - 43,220,879	RGD
Celera	X	23,026,482 - 23,026,713	UniSTS
RH 2.0 Map	21	213.5	RGD
SHRSP x BN Map	X	6.8999	RGD
FHH x ACI Map	X	7.93	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MR/Pit ODU/N WF/Pit WIST/Nhg NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N BN-Lx/Cub GH/Omr COP/OlaHsd
QTLs: Gluco15

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	CCCAGTATAAGCATCAGTTTCTG
Reverse Primer	CCTAATGGTTGCAAATGTATACC

Strain Variation

Strain, Expected Size(s)

AVN/Orl	231
BBDP/Rhw	218
BBDR/Rhw	218
BC/CpbU	229
BDIX/Han	229
BDVII/Cub	229
BN-Lx/Cub	231
BN/SsNHsd	231
BP/Cub	229
BUF/Pit	231
COP/OlaHsd	231

DA/PitN	233
DON/Melb	231
F344/Pit	231
FHH/Eur	231
GH/Omr	229
GK/KyoSwe	231
IS/Kyo	225
LE/Mol	235
LEW/Pit	231
LH/Mav	233
LOU/CHan	218

M520/N	229
MHS/Gib	218
MNRA/N	229
MR/Pit	229
NP9	218
ODU/N	225
OKA/Wsl	225
OM/Ztm	218
P5C	218
PVG/Pit	223
SD/Rij	218

SHR/OlaHsd	225
SHRSP/Riv	225
WAG/RijKyo	220
WF/Pit	218
WIST/Nhg	218
WKY/OlaHsd	225
WN/N	229
WTC/Kyo	231

Region

Nucleotide Sequences


GenBank Nucleotide	JH619819.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	1448129	31706553	Rat
631204	Gluco15	Glucose level QTL 15		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	1623715	22646544	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
71116	Niddm16	Non-insulin dependent diabetes mellitus QTL 16	7.81		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	15297802	60297802	Rat
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	20990947	41052531	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	20990947	41203591	Rat

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	369035	UniSTS
UniSTS	122626	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: DXRat83