D14Rat44 Marker Search Result - Rat Genome Database

General

Marker: D14Rat44

Symbol:

D14Rat44

Previously known as:

R0075-D04; oxsts6224;

RGD ID:

38616

Expected Size:

202 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	42,122,557 - 42,122,758	NCBI	Rnor6.0
RGSC_v3.4	14	43,077,432 - 43,077,631	UniSTS	RGSC3.4
Celera	14	39,624,995 - 39,625,194	UniSTS
RH 2.0 Map	14	472.8	RGD
SHRSP x BN Map	14	28.34	RGD
FHH x ACI Map	14	39.2099	RGD
Cytogenetic Map	14	p11	UniSTS

Is Marker For:

Strains: BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd DA/PitN FHH/Eur IS/Kyo LE/Mol LEW/Pit MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit SR/Jr OKA/Wsl P5C GK/KyoSwe BN-Lx/Cub LN/Mav GH/Omr
Genes: Atp8a1

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	TGTCCCTCTGTGCAATGTTC
Reverse Primer	CTCAAACCAGTGAGAGACTCCA

Strain Variation

Strain, Expected Size(s)

BBDP/Rhw	203
BBDR/Rhw	203
BC/CpbU	200
BDIX/Han	203
BDVII/Cub	200
BN-Lx/Cub	200
BN/SsNHsd	200
DA/PitN	203

FHH/Eur	200
GH/Omr	203
GK/KyoSwe	205
IS/Kyo	203
LE/Mol	205
LEW/Pit	205
LN/Mav	203
LOU/CHan	206

MHS/Gib	200
MNR/N	205
MNRA/N	205
MR/Pit	205
ODU/N	203
OKA/Wsl	203
P5C	204
SR/Jr	203

WF/Pit	203
WKY/OlaHsd	203
WN/N	205
WTC/Kyo	203

Region

Nucleotide Sequences


GenBank Nucleotide	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	289615	UniSTS
UniSTS	118382	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D14Rat44