D15Rat73 Marker Search Result - Rat Genome Database

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Marker: D15Rat73

Symbol: D15Rat73
Previously known as: R0075-A07; oxsts6297; 
RGD ID: 38578
Expected Size: 238 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.215821,049 - 821,287 (+)MAPPERmRatBN7.2
Rnor_6.015873,565 - 873,802NCBIRnor6.0
Rnor_5.015862,384 - 862,621UniSTSRnor5.0
RGSC_v3.415766,501 - 766,738UniSTSRGSC3.4
RGSC_v3.415766,261 - 766,899RGDRGSC3.4
RGSC_v3.115766,502 - 766,738RGD
Celera153,729,257 - 3,729,494UniSTS
RH 3.4 Map1534.9RGD
RH 3.4 Map1534.9UniSTS
RH 2.0 Map150.0RGD
SHRSP x BN Map153.9298RGD
FHH x ACI Map150.04RGD
Cytogenetic Map15p16UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Neuinf12  
Genes:   Kcnma1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TCTAGCTAAGCCCGGATTCA
Reverse Primer GATGGTCTCCCAAAACAGGA
 
Template 
GCATGCCTGCAGGTCGACTCTAGAGGATCCCCTGTGGCTAGGAAGGGCAGGAATATTTCTGATC
ATTGACTGGTCCTATGGATTAAGGAGAAACACACTAGAACTCTGCAGAGGTGCTTCCAACCCTC
CATAGACTTTCCTAATGGCCCTAACAACACATGATGTTGAGAGAGGAGTTAGGGAAAGATGACA
GATGGTCTCCCAAAACAGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTTGCCCCATTAAGATGATATTCAGGATGGCCTAACCTAGTGTTCT
CTGCTATGAGCAGTAACCAGAGAAGGCTGGCCTAGACTTCCAAAGGAAACATGGAGATAACAAG
TCCTTGATGGCCAGAATAAAATAGAATGAATCCGGGCTTAGCTAGAAAGCAGAACAAAGGGAAA
GCCAAGCAGAGAATGCATTTTTAAANCACGGTTAAAACNTTGANTTTCTTATATGTGTGTGTGG
TGTGTGTGTGT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
620715Kcnma1potassium calcium-activated channel subfamily M alpha 1153024801007675Rat

Nucleotide Sequences
GenBank Nucleotide CH474061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303286 UniSTS
  83731 UniSTS
UniSTS 118416 UniSTS