D1Rat234 Marker Search Result - Rat Genome Database

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Marker: D1Rat234

Symbol: D1Rat234
Previously known as: R0069-C03; oxsts6637; 
RGD ID: 38230
Expected Size: 152 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4141,225,048 - 41,225,199UniSTSRGSC3.4
RGSC_v3.4141,225,047 - 41,225,199RGDRGSC3.4
RGSC_v3.1141,227,993 - 41,228,144RGD
Celera142,702,392 - 42,702,542UniSTS
RH 3.4 Map1536.4UniSTS
RH 3.4 Map1536.4RGD
RH 2.0 Map1271.1RGD
SHRSP x BN Map122.7299RGD
FHH x ACI Map127.8699RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   FHH.FHH.1BN-(D1Rat234-D1Rat265)/Mcwi   AT.ANT-(D1Rat234-D1Rat47)/Rar   AT.ANT-(D1Rat234-D1Rat158)/Rar   AT.ANT-(D1Rat234-D1Rat35)/Rar   AT.ANT-(D1Rat234-D1Rat38)/Rar  
QTLs:   Neuinf4   Scort23  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer GCTGCCATTTAGTCTGGCTT
Reverse Primer GGGTACACTGGACTGGGAAA
 
Template 
CCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCTGGACATGTGGCTGAAGG
CTGGGGATGGAGGAGAAGACCTAGGAAGGCAGCGTATCCAGATAAGGGCCTGATTAGGGTACAC
TGGACTGGGAAAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTTTCAAATGTGTCCAAGGTAAGGCAGGGAAGTGTGTGGCCCCTGGAATCAGCAAGC
CAGACTAAATGGCAGCCTTGAAAAGGGAAATCTGCTAGAGGAGTGAGGAGTTTTCATTCAACGA
CCTCATCCTGCTTTCTTGTAAAATGAGGATATCCAAACAGGTATCCCTTCCTTCTCCTAATTGA
ACCACAGGCTGAGAAGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTGTCCTGTGTG
AAATTGTNATCCGCTCANAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGG
GGTGCCTAATGAGTGAGCTACTCACATTAATTGCGTTGCCTCACTGCCCGCTTTCANTCGGAAC
TGTCGTGCAGTTNANNATGAATCGNCANNCCGGGAGAGGNTTTGCTNTTGNNGCANGTGGTNNC
NNTCACAGTGAAGNNAAGT

Region

Nucleotide Sequences
GenBank Nucleotide CH474077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302956 UniSTS