D13Rat84 Marker Search Result - Rat Genome Database

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Marker: D13Rat84

Symbol: D13Rat84
Previously known as: R0061-A09; oxsts6178; 
RGD ID: 37726
Expected Size: 149 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21395,273,345 - 95,273,494 (+)MAPPERmRatBN7.2
Rnor_6.013102,047,734 - 102,047,882NCBIRnor6.0
Rnor_5.013106,731,099 - 106,731,247UniSTSRnor5.0
Celera1394,798,556 - 94,798,704UniSTS
RH 3.4 Map13645.3UniSTS
RH 3.4 Map13645.3RGD
RH 2.0 Map13703.8RGD
FHH x ACI Map1354.5099RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   LE/Mol   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MR/Pit   ODU/N   WF/Pit   SR/Jr   NP9   OKA/Wsl   OM/Ztm   P5C   SD/Rij   SHR/OlaHsd   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CAGGTCCTTTCATTCCAATG
Reverse Primer TATCCCCTTCTGTAGCGCG
 
Template 
CTGCAGGTCGACTCTAGAGGATCCCCCTTTTTACTCCGCTCCTATCCCCTTCTGTAGCGCGCGC
GCAACTACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGATGCATAGGAGAACTGGTATTATCATTGGAATGAAAGGACCTGT
GCTTGCCTCAGCCAGATTACTAAGGATTGTTGCCTTTGAAATCCCTGGACCTTCAGTATTCAAT
TACTCAATAAAACCTGACATTGTGGGAGAACAGAGCGGTGTTCATCAGCACGTTCTGGCCAACA
GTGACTTGCTGAACTGGCTGGCAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTT
TCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGACGGAAGCATANAGTGT
AAAGCCTGGNGTGCNTAATGAGTGAGCTNCTCACATTAATTGCGTCGCGCTCATGNCGTTTNAG
TCGGGAANTGTCGTGNANTCATTNTGAANGGCACGCGCGGTGAGANNGGTTGNTATTGNCGCNG
GTGNTTGTNTTCACAGTNNCGGC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7514973LOC102555798uncharacterized LOC102555798139522172595320830Rat

Nucleotide Sequences
GenBank Nucleotide JH617931.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat


Additional Information

Database Acc Id Source(s)
UniSTS 118342 UniSTS