Marker: D14Rat66 |
Symbol: |
D14Rat66 |
Previously known as: |
R0058-B04; oxsts6240;
|
RGD ID: |
37528 |
Expected Size: |
231 (bp) |
Position |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
---|
mRatBN7.2 | 14 | 1,915,340 - 1,915,553 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 14 | 2,932,439 - 2,932,651 | NCBI | Rnor6.0 | Rnor_5.0 | 14 | 2,932,840 - 2,933,052 | UniSTS | Rnor5.0 | RGSC_v3.4 | 14 | 2,469,113 - 2,469,326 | RGD | RGSC3.4 | RGSC_v3.4 | 14 | 2,469,114 - 2,469,326 | UniSTS | RGSC3.4 | RGSC_v3.1 | 14 | 2,469,114 - 2,469,326 | RGD | | Celera | 14 | 1,934,896 - 1,935,108 | UniSTS | | RH 3.4 Map | 14 | 34.0 | UniSTS | | RH 3.4 Map | 14 | 34.0 | RGD | | RH 2.0 Map | 14 | 44.9 | RGD | | SHRSP x BN Map | 14 | 2.29 | RGD | | FHH x ACI Map | 14 | 1.37 | RGD | |
|
Is Marker For: |
Strains:
AVN/Orl
BBDP/Rhw
BBDR/Rhw
BC/CpbU
BDIX/Han
BDVII/Cub
BN/SsNHsd
BUF/Pit
DA/PitN
DON/Melb
F344/Pit
FHH/Eur
LEW/Pit
MHS/Gib
MNRA/N
WN/N
WKY/OlaHsd
WTC/Kyo
LOU/CHan
MNR/N
MR/Pit
WIST/Nhg
SR/Jr
NP9
OKA/Wsl
OM/Ztm
P5C
PVG/Pit
SD/Rij
SHR/OlaHsd
SHRSP/Riv
WAG/RijKyo
GK/KyoSwe
M520/N
ACI/N
BN-Lx/Cub
LN/Mav
GH/Omr
COP/OlaHsd
SS/Jr
BP/Cub
IS/Kyo
ODU/N
WF/Pit
MNS/Gib
NEDH/K
Genes:
Evi5
|
Annotation
References - curated
# |
Reference Title |
Reference Citation |
1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
2. |
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. |
Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
|
3. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
4. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
5. |
UniSTS Pipeline |
RGD automated pipelines
|
6. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
7. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
|
Forward Primer |
CACGCCAACTGTATTTGTCTG |
Reverse Primer |
GCCTTGAACTTGTGATCTTCC |
|
Template |
GNAGGATCCCCCNGGCCTTGAACTTGTGATCTTCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGT GACGGTGTAAAGATGCATTTTGCCTGATGCCTAGAGAATACCAGCATGACTGAAGAATGGCTGG CTTACAGTTCTGTTAGGAAAAGAATGCTGTTTCAGACAAATACAGTTGGCGTGTCTAATGTTTT ACTAGAGTATGAGTCAGGGAAGACTTCAAAGAGGGGTACCGAGCTCGAATTCGTAATCATGGTC ATAGCTGTTTCCTGTGTGAAATTGTTATCCGCNCACAATTCCACACAACATACGAGCCGGAGCA TAAAGTGTAAAGCCTGGGNGGTGCCTAATGAGTGAGCTAACTCNCATNAATTGCGTTGCGCNCA NTGCCCGCTTNTCCANTCGGGAANCCTGTCGTGNCAGCTGCATTNATNA
|
Strain Variation
Strain, Expected Size(s)
Region
Genes in Region
2322879 | Evi5 | ecotropic viral integration site 5 | 14 | 1875601 | 2021678 | Rat | |
QTLs in Region (mRatBN7.2)
2300159 | Bmd61 | Bone mineral density QTL 61 | 5.3 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 14 | 1 | 26541967 | Rat | 2300183 | Bmd60 | Bone mineral density QTL 60 | 5.7 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 14 | 1 | 26541967 | Rat | 619619 | Rf4 | Renal disease susceptibility QTL 4 | 4.1 | 0.002 | urine total protein amount (VT:0000032) | urine protein excretion rate to body weight ratio (CMO:0001099) | 14 | 1 | 32754612 | Rat | 634352 | Apr6 | Acute phase response QTL 6 | 3.7 | | blood interleukin-6 amount (VT:0008595) | plasma interleukin-6 level (CMO:0001927) | 14 | 1 | 41131407 | Rat | 71115 | Niddm15 | Non-insulin dependent diabetes mellitus QTL 15 | 4.8 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 14 | 1217606 | 11030812 | Rat | 70204 | Niddm20 | Non-insulin dependent diabetes mellitus QTL 20 | 5.1 | 0.000008 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 14 | 1217606 | 16960180 | Rat | |