D8Rat10 Marker Search Result - Rat Genome Database

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Marker: D8Rat10

Symbol: D8Rat10
Previously known as: R0045-D09; oxsts7406; R045-D09; 
RGD ID: 36934
Expected Size: 184 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.08118,087,517 - 118,087,701NCBIRnor6.0
Rnor_5.08117,431,943 - 117,432,127UniSTSRnor5.0
Celera8109,281,056 - 109,281,240UniSTS
RH 3.4 Map81113.69UniSTS
RH 3.4 Map81113.69RGD
SHRSP x BN Map871.8999RGD
SHRSP x BN Map871.8999UniSTS
Cytogenetic Map8q32UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Bmd3  
Genes:   Map4  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ACTTTCTCCCCCATCTCTCC
Reverse Primer TGCTTCTTTGCTCTGTTTTGTT
 
Template 
GCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTTAACTTAATATGCTTCTTTGC
TCTGTTTTGTTAAAAAATTCACCCTTGTTTTTAATTGTGTGTACAAATGTGTGAGCGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGATAAAAG
GGGGGAGAAGGGAGAGATGGGGGAGAAAGTAGAAGAGAAAGGAGGGAGGAGGGAGAGAGAGAGA
TAAAAGGAGGGAGGGGNGAGAGNNNNANAAAGANAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAACGAATGAACCCNAAGGCCAGAGGGGACTCCCTGGAGGGGTACCGAGCTCGAATNCGTA
ATCGTGGTCATANCTGTTNCCTGTGTAAAATTGTTACCCGCTCACAATTCCACACAACATGCGA
NCCGGAANC

Region

Nucleotide Sequences
GenBank Nucleotide CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302795 UniSTS
  367171 UniSTS
UniSTS 119075 UniSTS