D3Rat1 Marker Search Result - Rat Genome Database

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Marker: D3Rat1

Symbol: D3Rat1
Previously known as: oxsts6919; R044-B04; R0044-B04; 
RGD ID: 36745
Expected Size: 159 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23168,026,691 - 168,026,850 (+)MAPPERmRatBN7.2
Rnor_6.03176,417,943 - 176,418,101NCBIRnor6.0
Rnor_5.03180,127,863 - 180,128,021UniSTSRnor5.0
RGSC_v3.43170,016,252 - 170,016,653RGDRGSC3.4
RGSC_v3.43170,016,309 - 170,016,467UniSTSRGSC3.4
Celera3164,558,222 - 164,558,366UniSTS
RGSC_v3.13169,922,345 - 169,922,503RGD
RH 3.4 Map31533.2RGD
RH 3.4 Map31533.2UniSTS
RH 2.0 Map31027.1RGD
SHRSP x BN Map391.5299RGD
FHH x ACI Map3104.89RGD
Cytogenetic Map3q43UniSTS
Is Marker For: Strains:   ACI/N   AVN/Orl   BBDR/Rhw   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   COP/OlaHsd   DA/PitN   FHH/Eur   F344/Pit   GH/Omr   GK/KyoSwe   DON/Melb   M520/N   IS/Kyo   WN/N   LH/Mav   LE/Mol   LEW/Pit   LOU/CHan   LN/Mav   MHS/Gib   MNR/N   MNRA/N   MNS/Gib   MR/Pit   NEDH/K   NP9   ODU/N   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SR/Jr   SHRSP/Riv   SS/Jr   WAG/RijKyo   WF/Pit   WIST/Nhg   WKY/OlaHsd   WTC/Kyo   SHR.WKY-(D3Tkyo7-D3Rat1)/Tkyo   SHR.WKY-(D3Mgh6-D3Rat1)/Tkyo   SHR.BN-(D3Rat159-D3Rat1)/Mco   DA.WOKW-(D3Mgh5-D3Rat1)/K   SHRSP.WKY-(D3Tkyo7-D3Rat1)/Tkyo   SHRSP.WKY-(D3Rat227-D3Rat1)/Tkyo   SS-Chr 3BN.SS-(D3Arb3-D3Rat93)( D3Rat78-D3Rat1).Il2rgem1/Mcwi   SS-Chr 3BN.SS-(D3Arb3-D3Rat93)( D3Rat78-D3Rat1)/Mcwi  
QTLs:   Rf10   Vnigr1   Vencon4   Slep7   Bw94   Scl63   Alcrsp26  
Genes:   Ythdf1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer ACAGAGGGTCCTGAAAGGGT
Reverse Primer AATTCAGCCCATGACAAAGG
 
Template 
GCCTGCAGGTCGACTCTCAGAGGATCCCCCTGGTTTCTGATCAGTGGGTCTAGCAGCCACCCTG
TCTTCCCTTGCAATGCATCTAAATTCAGCCCATGACAAAGGTCTCTGATGCAAGGAGCATGAAC
CTCCCCCACCACACACACACACACACACACACACACACACACAAACACACACACACACACACAC
ACACACACAAACACTCAATGTTCTCTCTGTCCTAACCCTTTCAGGACCCTCTGTACAGCAGTCA
CATGTGTGTGTATGTGTGTTAGTGTGTCGNTCTGATTACCTGCCCCCCCCCATCCCCACTCTCT
CACATGTACCACACTGTCATGCTATTGGAGAAAGTGTATAAATAAAAAACTACACTCAAGAGGT
TAAATGTTCCATCCCTAGCATGGCCCTCCTAGGTGTGAATGAGAAAGGGGTACGAGCTCGAATT
CGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACAT
ACGAGCCGGNGCATAAAGTGTAAAGNTGGGGTGCTATGAGTGAGTACTCACATTATTGCGTTGG
TCA

Region

Nucleotide Sequences
GenBank Nucleotide CH474066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302818 UniSTS
  100303001 UniSTS
  100303630 UniSTS
  100303638 UniSTS
  100303641 UniSTS
  100423057 UniSTS
  296467 UniSTS