D15Rat29 Marker Search Result - Rat Genome Database

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Marker: D15Rat29

Symbol: D15Rat29
Previously known as: R0037-D03; oxsts6266; R037-D03; 
RGD ID: 36602
Expected Size: 154 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.415108,387,243 - 108,387,411UniSTSRGSC3.4
RGSC_v3.415108,387,242 - 108,387,411RGDRGSC3.4
RGSC_v3.115108,403,023 - 108,403,191RGD
Celera1599,127,682 - 99,127,850UniSTS
RH 3.4 Map15766.2RGD
RH 3.4 Map15766.2UniSTS
RH 2.0 Map15653.9RGD
SHRSP x BN Map1566.5198RGD
FHH x ACI Map1574.04RGD
Cytogenetic Map4q34UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   BUF.ACI-(D15Rat68-D15Rat29)/Ncc   ACI.BUF-(D15Rat97-D15Rat29)/Ncc  
QTLs:   Gcs1   Foco21  
Genes:   Mogs  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer AGAGGTGATGCCAAGTGCTT
Reverse Primer TGACCTATTTGCATTTGGCA
 
Template 
GCAGGTCGACTCTAGAGGATCCCCACCTAAGACTCTTTATAAATGTAGTTGTATACCCCCAACC
CTTATATTTATTATAGGGACAGTCAAATGTGAGTTTCTGTCCCATGCTGTCCCTCTGCTCCCCA
GAGACTCCTCATGACCTATTTGCATTTGGCATTTGGATTCAGGACAACACACACACACACACAC
ACACACACACACACACACACACATACACACACACACACACACACACACACACACACAAATCAGA
ATTGGAAGAGAAAATGAAGCACTTGGCATCACCTCTCAGTGTATCTCAAGTCTGCACACTGTGG
GTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCA
CAATTCCACACAACATANGAGCCGGAAGCATNAAGTGTAAAGCCTGGGGTGCCTAATGAGTGNN
NTANCTCACATTANNTGCGTTGNNCNCATGCCCGNTTTCCNNTCGGGAAACCNGTCNNGCCNGN
TGANNNNNGANTCGGGCNANCGCGCGGNGAGAGGGCAACGCGCGGGGAGAGGCGGTTTGNGTAT
NGGGNNNAGGGTGGTTTTNCTTTNC

Region

Nucleotide Sequences
GenBank Nucleotide CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 474369 UniSTS
  78947 UniSTS
UniSTS 119306 UniSTS